View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13354_low_11 (Length: 266)

Name: NF13354_low_11
Description: NF13354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13354_low_11
NF13354_low_11
[»] chr3 (7 HSPs)
chr3 (1-256)||(42250717-42250972)
chr3 (34-185)||(31779564-31779715)
chr3 (8-90)||(14427217-14427298)
chr3 (16-68)||(2120515-2120567)
chr3 (8-112)||(13291683-13291786)
chr3 (124-183)||(5798278-5798337)
chr3 (41-112)||(19905736-19905806)
[»] chr5 (9 HSPs)
chr5 (12-190)||(19903467-19903645)
chr5 (8-180)||(37390188-37390360)
chr5 (47-151)||(16791189-16791293)
chr5 (8-68)||(22186070-22186130)
chr5 (8-112)||(26335556-26335659)
chr5 (41-159)||(18325461-18325578)
chr5 (71-159)||(6037940-6038027)
chr5 (14-66)||(17241670-17241722)
chr5 (8-60)||(26013780-26013832)
[»] chr8 (7 HSPs)
chr8 (42-174)||(33925546-33925678)
chr8 (8-185)||(34062328-34062504)
chr8 (42-157)||(12012395-12012509)
chr8 (8-157)||(17872355-17872504)
chr8 (8-113)||(26576617-26576721)
chr8 (34-149)||(6589415-6589530)
chr8 (8-68)||(23584908-23584968)
[»] scaffold0217 (1 HSPs)
scaffold0217 (41-156)||(6909-7024)
[»] chr1 (10 HSPs)
chr1 (8-190)||(29076840-29077022)
chr1 (10-153)||(19960263-19960404)
chr1 (16-137)||(20619698-20619819)
chr1 (53-189)||(11105254-11105391)
chr1 (8-112)||(22666270-22666374)
chr1 (36-157)||(35896036-35896157)
chr1 (47-112)||(17103360-17103424)
chr1 (8-77)||(17316391-17316460)
chr1 (16-68)||(12669098-12669150)
chr1 (8-60)||(30805835-30805887)
[»] chr4 (9 HSPs)
chr4 (9-189)||(13977300-13977480)
chr4 (41-183)||(12236156-12236298)
chr4 (65-189)||(27940814-27940937)
chr4 (8-155)||(12191080-12191226)
chr4 (35-157)||(23865971-23866093)
chr4 (56-105)||(11779872-11779921)
chr4 (8-89)||(17743585-17743666)
chr4 (15-67)||(9883408-9883460)
chr4 (11-112)||(11545216-11545316)
[»] chr6 (3 HSPs)
chr6 (14-157)||(19691923-19692066)
chr6 (35-177)||(23601028-23601170)
chr6 (8-67)||(21747105-21747164)
[»] chr2 (4 HSPs)
chr2 (8-189)||(13112394-13112575)
chr2 (35-182)||(26704488-26704635)
chr2 (6-68)||(25563999-25564061)
chr2 (8-112)||(42256288-42256391)
[»] scaffold0514 (1 HSPs)
scaffold0514 (11-190)||(7158-7337)
[»] chr7 (8 HSPs)
chr7 (7-148)||(28981163-28981300)
chr7 (56-156)||(11609157-11609257)
chr7 (8-68)||(26822370-26822430)
chr7 (8-112)||(1783011-1783114)
chr7 (201-257)||(14054374-14054430)
chr7 (201-257)||(14364402-14364458)
chr7 (8-67)||(27707316-27707375)
chr7 (41-108)||(32957606-32957672)
[»] scaffold0010 (1 HSPs)
scaffold0010 (8-155)||(137004-137151)
[»] scaffold1190 (1 HSPs)
scaffold1190 (11-149)||(1225-1363)
[»] scaffold0329 (1 HSPs)
scaffold0329 (16-153)||(4286-4421)
[»] scaffold0650 (1 HSPs)
scaffold0650 (11-112)||(5897-5997)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 42250717 - 42250972
Alignment:
Q  1 acactagtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaa 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  42250717 acactagtagtacaatttgtcttcttctcaccccgtgcaaaaacaaataaagaacttcaaagacaaatggaatgaaacagataattccaattgaagcaaa 42250816  T
Q  101 gaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatgttctctctcta 200  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42250817 gaaatttcaaataatttttcaacgacattaaccaaatcaaaagacattccaacgtctctcatcgagattctcaaggactcaaatttatgttctctctcta 42250916  T
Q  201 agatgcttttaacgtggtcttggcgctgaatgttcaccaacaatctctcacctatg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42250917 agatgcttttaacgtggtcttggcgctgaatgttcaccaacaatctctcacctatg 42250972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 185
Target Start/End: Complemental strand, 31779715 - 31779564
Alignment:
Q  34 cgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacc 133  Q
    |||||| |||||||||||||||||||||||||||  |||| |||| |||||||||  |  | |||||| |||||||||  |  |||||  ||||||||||    
T  31779715 cgtgcagaaacaaacaaagaacttcaaagacaaataaaataaaacggataattcctttaaatgcaaaggaatttcaaacgacctttcaacgacattaacc 31779616  T
Q  134 aaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatt 185  Q
    ||||||  | ||||| |||||||||| ||| || |||| ||||| |||||||    
T  31779615 aaatcataaaacatttcaacgtctctgatcaagcttcttaaggagtcaaatt 31779564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 14427217 - 14427298
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaa 90  Q
    |||||||||||||||| |||| ||  |||| | |||||||||||||||||||| |||| ||  |||| |||||||||||||||    
T  14427217 tagtacaatttgtctttttctaaccacgtgtataaacaaacaaagaacttcaaggacatagagaatg-aacagataattccaa 14427298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 2120515 - 2120567
Alignment:
Q  16 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 68  Q
    ||||||||||| | || |||| ||||||||||||||||||||||| |||||||    
T  2120515 tttgtcttcttttgaccccgtacaaaaacaaacaaagaacttcaatgacaaag 2120567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 13291683 - 13291786
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    ||||||||||||||||||||| ||  |||| | |||||||||||||||| ||| ||||||   |||| ||| ||||||| || ||  | |||||||||||    
T  13291683 tagtacaatttgtcttcttctgaccacgtgtagaaacaaacaaagaactccaaggacaaaaagaatg-aacggataatttcagtttcaacaaagaaattt 13291781  T
Q  108 caaat 112  Q
    |||||    
T  13291782 caaat 13291786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 5798278 - 5798337
Alignment:
Q  124 gacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaa 183  Q
    ||||||||||||||||||| ||||||||| |||| | ||  || ||||||||||||||||    
T  5798278 gacattaaccaaatcaagaaacattccaatgtctatgattaagcttctcaaggactcaaa 5798337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 19905806 - 19905736
Alignment:
Q  41 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaat 112  Q
    ||||||| ||||||||||||||||||||  |||| |||| ||| ||||| | | ||||||||||||||||||    
T  19905806 aaacaaataaagaacttcaaagacaaagagaatg-aacaaatagttccagtcgcagcaaagaaatttcaaat 19905736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 19903645 - 19903467
Alignment:
Q  12 acaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaa 111  Q
    |||||||||  |||||| ||  |||||  ||| ||||||||||||| || |||||||| ||||||||| |||||| |||||||||||||| |||||||||    
T  19903645 acaatttgttatcttctgaccacgtgctgaaataaacaaagaactttaaggacaaaggcaatgaaacatataatttcaattgaagcaaaggaatttcaaa 19903546  T
Q  112 taatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatgt 190  Q
    | |  ||||| |||||||||||||||||| | ||||||| |||||||| ||| || |||| ||||||||||||||||||    
T  19903545 tgaactttcaatgacattaaccaaatcaataaacattcccacgtctctaatcaagcttctaaaggactcaaatttatgt 19903467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 37390360 - 37390188
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    ||||||| ||| ||||||||| ||  | |||| |||||||||||||||||||| || ||  | ||||||||||||||||||  || |||||||| |||||    
T  37390360 tagtacattttatcttcttctgaccacatgcagaaacaaacaaagaacttcaaggataattggaatgaaacagataattccttttcaagcaaaggaattt 37390261  T
Q  108 caaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactc 180  Q
    |||||   ||||||  || ||||||| |||| ||| |||||||||||||| | ||| || ||||||| |||||    
T  37390260 caaatgtcttttcaacgatattaaccgaatcgagaaacattccaacgtctatgatcaagcttctcaaagactc 37390188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 16791293 - 16791189
Alignment:
Q  47 acaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagaca 146  Q
    |||| ||||||||| |||||  | ||||||||| | |||| |  ||||||||||| ||||| |||||  ||||||  ||||||||||||||||||| |||    
T  16791293 acaatgaacttcaaggacaattggaatgaaacatacaatttcttttgaagcaaaggaattttaaatatcttttcaacgacattaaccaaatcaagaaaca 16791194  T
Q  147 ttcca 151  Q
    |||||    
T  16791193 ttcca 16791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 22186130 - 22186070
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 68  Q
    ||||||||||||||||||||| ||  |||||| |||||||||||| | |||||||||||||    
T  22186130 tagtacaatttgtcttcttctgacaacgtgcagaaacaaacaaaggaattcaaagacaaag 22186070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 26335556 - 26335659
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    |||||||||||||| |||||| ||   ||||| | ||||| ||||||| |||| |||||| |||||| ||| |||||||||| ||| ||||||| |||||    
T  26335556 tagtacaatttgtcctcttctgaccatgtgcagatacaaataaagaacctcaaggacaaaagaaatg-aacggataattccagttgcagcaaaggaattt 26335654  T
Q  108 caaat 112  Q
    |||||    
T  26335655 caaat 26335659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 18325461 - 18325578
Alignment:
Q  41 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaa 140  Q
    |||||||||||||||||||  |||||  | ||||||||| ||||||||  ||||||||||| |||| ||||  |  |||||   |||||||||| | |||    
T  18325461 aaacaaacaaagaacttcagggacaattggaatgaaacacataattccttttgaagcaaaggaattccaaaagaactttcaacaacattaaccataccaa 18325560  T
Q  141 gagacattccaacgtctct 159  Q
    || ||||||||||||||||    
T  18325561 ga-acattccaacgtctct 18325578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 6038027 - 6037940
Alignment:
Q  71 aatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctct 159  Q
    |||||||||||||||||||| |||||||||| |||||  ||||   |||||  | ||||||| ||||||||| | ||||||||||||||    
T  6038027 aatgaaacagataattccaaatgaagcaaaggaattt-gaatacgctttcaacgtcattaactaaatcaagaaatattccaacgtctct 6037940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 17241722 - 17241670
Alignment:
Q  14 aatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaa 66  Q
    ||||||||||||||| ||   |||||||||||||||||||| ||| |||||||    
T  17241722 aatttgtcttcttctaacaatgtgcaaaaacaaacaaagaaattcgaagacaa 17241670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 26013832 - 26013780
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaa 60  Q
    ||||||||||||||||||||| ||   ||| | ||||||||||||||||||||    
T  26013832 tagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaagaacttcaa 26013780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 33925546 - 33925678
Alignment:
Q  42 aacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaag 141  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||   |||||||||||||||||||||||  ||||||  ||||||||||||||||||    
T  33925546 aacaaacaaagaacttcaaagacaaatgaaatgaaatggataattcattttgaagcaaagaaatttcaaatatcttttcaacgacattaaccaaatcaag 33925645  T
Q  142 agacattccaacgtctctcatcgagattctcaa 174  Q
    | |||||| || |||| | ||| || |||||||    
T  33925646 aaacattctaatgtctatgatcaagcttctcaa 33925678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 34062328 - 34062504
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    ||||||||||||||||||| | ||  |||||| |||||||||||||||||||||| ||   | ||||||||| |||||| |  |||||||||| ||||||    
T  34062328 tagtacaatttgtcttcttgtgaccacgtgcagaaacaaacaaagaacttcaaaggcagttggaatgaaacaaataatt-cttttgaagcaaataaattt 34062426  T
Q  108 caaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatt 185  Q
    ||||| |  ||| |  ||||||||||||||||||| |||||| || |||| | |   || ||||||||||||||||||    
T  34062427 caaatgaccttttaaagacattaaccaaatcaagaaacattcaaatgtctttgacgaagtttctcaaggactcaaatt 34062504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 12012395 - 12012509
Alignment:
Q  42 aacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaag 141  Q
    |||||||||| || ||||| ||| | || ||||||| ||||||||||||||||||||||| |||||||||| |  ||||| || ||||||||||||||||    
T  12012395 aacaaacaaaaaa-ttcaaggactaggggaatgaaagagataattccaattgaagcaaaggaatttcaaatgacctttcaatggcattaaccaaatcaag 12012493  T
Q  142 agacattccaacgtct 157  Q
      ||||||||||||||    
T  12012494 caacattccaacgtct 12012509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 17872355 - 17872504
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    |||||||||||||| |||||| ||| | || | || ||||||||||||||||| || ||  | ||||||||| ||||||||   ||||||||||||||||    
T  17872355 tagtacaatttgtcctcttctaactacatgaagaaccaaacaaagaacttcaaggataattggaatgaaacatataattccgtatgaagcaaagaaattt 17872454  T
Q  108 caaataatttttcattgacattaaccaaatcaagagacattccaacgtct 157  Q
    ||||| |   |||| ||||||||||||||| |||| |||  |||||||||    
T  17872455 caaatgagagttcaatgacattaaccaaattaagaaacacaccaacgtct 17872504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 26576721 - 26576617
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    ||||||||||| ||||||||| |   |||||| | |||||||||||||||||||||||||   |||| |||| ||||||||| ||| | ||||| |||||    
T  26576721 tagtacaatttttcttcttctaatctcgtgcagatacaaacaaagaacttcaaagacaaaaagaatg-aacaaataattccagttgcaacaaaggaattt 26576623  T
Q  108 caaata 113  Q
    ||||||    
T  26576622 caaata 26576617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 6589415 - 6589530
Alignment:
Q  34 cgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacc 133  Q
    |||||| ||||||||||||||||||||  |||   | |||||| || |||||| || ||||||||||| |||||| ||| |  |||||  || |||| ||    
T  6589415 cgtgcagaaacaaacaaagaacttcaagaacagttggaatgaatcaaataatttcatttgaagcaaaggaatttcgaatgacctttcaacgatattatcc 6589514  T
Q  134 aaatcaagagacattc 149  Q
    ||||||||| ||||||    
T  6589515 aaatcaagaaacattc 6589530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 23584908 - 23584968
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 68  Q
    ||||||| |||||||| |||| ||  |||| | |||||||||||||||||||| |||||||    
T  23584908 tagtacactttgtcttattctgaccacgtgtataaacaaacaaagaacttcaaggacaaag 23584968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 6909 - 7024
Alignment:
Q  41 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaa 140  Q
    ||||||||||||||| | || |||||  | ||||||||||||||||||  |||||||||||||||||||||||  ||||||  |||||||||||||||||    
T  6909 aaacaaacaaagaacattaaggacaattggaatgaaacagataattccttttgaagcaaagaaatttcaaatatcttttcaacgacattaaccaaatcaa 7008  T
Q  141 gagacattccaacgtc 156  Q
    || ||||| |||||||    
T  7009 gaaacatttcaacgtc 7024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 29076840 - 29077022
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    ||||| ||||| ||||||||| |   |||||| |||||||||||  | ||||| |||||| ||||||||||  |||||| || ||||||||||  |||||    
T  29076840 tagtataatttatcttcttctaaacacgtgcagaaacaaacaaaacaattcaaggacaaatgaaatgaaacgaataatttcatttgaagcaaatgaattt 29076939  T
Q  108 caaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatgt 190  Q
    ||||| |  |||||    ||||||||||||||||| |||||||||||||| | ||| || ||||||| | |||||||||||||    
T  29076940 caaatgacatttcaacatcattaaccaaatcaagaaacattccaacgtctttgatcaagtttctcaaaggctcaaatttatgt 29077022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 19960263 - 19960404
Alignment:
Q  10 gtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttca 109  Q
    ||||| ||||||||||||| ||  |||||||||||| |||| |||||||||||||||  | |||||| || |||||||   ||||||||||| |||||||    
T  19960263 gtacactttgtcttcttctgaccacgtgcaaaaacatacaa-gaacttcaaagacaattggaatgaa-caaataattctttttgaagcaaaggaatttca 19960360  T
Q  110 aataatttttcattgacattaaccaaatcaagagacattccaac 153  Q
    |||   ||||||  |||||||||||||||| || ||||||||||    
T  19960361 aatgtcttttcaacgacattaaccaaatcatgaaacattccaac 19960404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 20619819 - 20619698
Alignment:
Q  16 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataat 115  Q
    |||||| |||||| ||| |||||| ||||||||||||||||||||||||||  ||||| ||||||||||||  | |||||  |||  ||||| |||| |     
T  20619819 tttgtcctcttctgactacgtgcagaaacaaacaaagaacttcaaagacaattgaaataaaacagataatttaatttgaaaaaaatgaatttaaaatgac 20619720  T
Q  116 ttttcattgacattaaccaaat 137  Q
     ||||| |||||||||||||||    
T  20619719 ctttcaatgacattaaccaaat 20619698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 11105391 - 11105254
Alignment:
Q  53 aacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaa 152  Q
    |||||||| || ||||| || |||||| |||||||||||||| | |||| | ||| |||| |  ||||| ||| |||||||| ||||||| |||||| ||    
T  11105391 aacttcaaggataaagggaacgaaacatataattccaattgatgaaaaggagtttaaaatgacctttcaatgatattaaccagatcaagaaacattctaa 11105292  T
Q  153 cgtctctcatc-gagattctcaaggactcaaatttatg 189  Q
    ||||||| | |  || |||||||||||| |||||||||    
T  11105291 cgtctctgaccaaagcttctcaaggactaaaatttatg 11105254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 22666374 - 22666270
Alignment:
Q  8 tagtacaattt-gtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatt 106  Q
    ||||||||||| |||||||||| ||  |||| | |||| ||||||||||||||| |||||||  |||| |||||||||||||| || |||| || |||||    
T  22666374 tagtacaattttgtcttcttctaaccacgtgtagaaacgaacaaagaacttcaaggacaaagagaatg-aacagataattccagtttaagcgaaaaaatt 22666276  T
Q  107 tcaaat 112  Q
    ||||||    
T  22666275 tcaaat 22666270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 35896157 - 35896036
Alignment:
Q  36 tgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaa 135  Q
    |||| ||||||| ||||||||| || || ||  | |||||||  |||||||||  ||||||||||  ||||||||||   ||||||  ||||||||||||    
T  35896157 tgcagaaacaaataaagaactttaaggaaaatcggaatgaaatggataattccttttgaagcaaatgaatttcaaatttcttttcaaagacattaaccaa 35896058  T
Q  136 atcaagagacattccaacgtct 157  Q
    ||||| | ||||||||||||||    
T  35896057 atcaaaaaacattccaacgtct 35896036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 17103360 - 17103424
Alignment:
Q  47 acaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaat 112  Q
    ||||||||||| || || ||||  |||||| |||||||||||| ||| ||||||||||||||||||    
T  17103360 acaaagaactttaaggataaagagaatgaa-cagataattccagttgcagcaaagaaatttcaaat 17103424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 17316391 - 17316460
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaa 77  Q
    ||||||||||||||||||||| ||   ||| | |||||||||| |||||| || ||||||| ||||||||    
T  17316391 tagtacaatttgtcttcttctgaccatgtgtagaaacaaacaaggaactttaaggacaaagaaaatgaaa 17316460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 12669098 - 12669150
Alignment:
Q  16 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 68  Q
    ||||||||||||| ||  | |||||||||| |||||||||||||| |||||||    
T  12669098 tttgtcttcttctgaccacatgcaaaaacagacaaagaacttcaaggacaaag 12669150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 30805835 - 30805887
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaa 60  Q
    |||||||||||||||||||||  |  |||| | ||||||||||||||||||||    
T  30805835 tagtacaatttgtcttcttctggccacgtgtagaaacaaacaaagaacttcaa 30805887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 13977300 - 13977480
Alignment:
Q  9 agtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttc 108  Q
    |||||| |||| |||||||| ||| |||||| ||||||||||||||||||||||||||    ||| ||||| |||||||   ||||||||||| ||||||    
T  13977300 agtacagtttgccttcttctgactacgtgcagaaacaaacaaagaacttcaaagacaattagaattaaacaaataattctttttgaagcaaaggaatttc 13977399  T
Q  109 aaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatg 189  Q
    |||| |  |||||  || | |||||| ||||||| |||||||||| |||   ||  || ||||||||||||||| ||||||    
T  13977400 aaatgacctttcaacgataataaccatatcaagaaacattccaacatcttggattaagtttctcaaggactcaattttatg 13977480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 12236298 - 12236156
Alignment:
Q  41 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaa 140  Q
    ||||| || ||||||||||| |||||  |||||||||| |||||||||  ||||||||||  ||||| ||||   ||||||  |||||||||||| ||||    
T  12236298 aaacatacgaagaacttcaaggacaattgaaatgaaacggataattccttttgaagcaaaagaattttaaatgtcttttcaacgacattaaccaactcaa 12236199  T
Q  141 gagacattccaacgtctctcatcgagattctcaaggactcaaa 183  Q
    || |||||  ||||||| | ||| || |||||| |||||||||    
T  12236198 gaaacatttgaacgtctatgatcaagcttctcagggactcaaa 12236156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 27940937 - 27940814
Alignment:
Q  65 aaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcg 164  Q
    ||||| ||||||||| ||||||||||||||   |||  |||||||||  |  |||||  ||||||||||||||||||| ||||| ||| |||||| |||     
T  27940937 aaagggaatgaaacatataattccaattgagataaaagaatttcaaacgacctttcaacgacattaaccaaatcaagaaacatt-caatgtctctgatca 27940839  T
Q  165 agattctcaaggactcaaatttatg 189  Q
    || ||||||| ||||||||||||||    
T  27940838 agcttctcaatgactcaaatttatg 27940814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 12191226 - 12191080
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    ||||||| ||||||||||| | ||   ||||| ||||| | ||||||||||||||||||  | | |||| |||||||||||  ||||||||||| |||||    
T  12191226 tagtacactttgtcttcttgtaaccatgtgcagaaacagaaaaagaacttcaaagacaattggattgaa-cagataattccttttgaagcaaaggaattt 12191128  T
Q  108 caaataatttttcattgacattaaccaaatcaagagacattccaacgt 155  Q
    |||||    || ||   |||||||||||||||||| | ||||||||||    
T  12191127 caaatgtcgttccaacaacattaaccaaatcaagaaatattccaacgt 12191080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 23866093 - 23865971
Alignment:
Q  35 gtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacca 134  Q
    ||||| |||||||||||||||||||| |||||  | ||||||||  ||||||||  ||||||||||| ||||| |||| |  ||  |  |||||||| ||    
T  23866093 gtgcataaacaaacaaagaacttcaaggacaattggaatgaaacgaataattccttttgaagcaaaggaattttaaatgacattcaaacgacattaatca 23865994  T
Q  135 aatcaagagacattccaacgtct 157  Q
     ||||||| |||||||| |||||    
T  23865993 tatcaagaaacattccaccgtct 23865971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 11779921 - 11779872
Alignment:
Q  56 ttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaat 105  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||| ||||    
T  11779921 ttcaatgacaaagggaatgaaacggataattccaattgaagcaaaaaaat 11779872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 17743666 - 17743585
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattcca 89  Q
    |||||| |||||||||||| | ||  |||||| |||||||||||||| ||||| |||||||  |||| ||||||| ||||||    
T  17743666 tagtactatttgtcttcttatgaccacgtgcagaaacaaacaaagaagttcaatgacaaagagaatgtaacagatcattcca 17743585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 9883408 - 9883460
Alignment:
Q  15 atttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 67  Q
    |||||| ||||||| ||| || |||||||||||||||||||||||| ||||||    
T  9883408 atttgtattcttctgactacgcgcaaaaacaaacaaagaacttcaatgacaaa 9883460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 11545316 - 11545216
Alignment:
Q  11 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 110  Q
    |||||||||||||||||| ||   ||| | ||||||||||| |||||||| |||||||  ||| |||| |||||||||| ||  | ||||| ||||||||    
T  11545316 tacaatttgtcttcttctgaccatgtgtagaaacaaacaaaaaacttcaaggacaaagagaat-aaacggataattccagtttcaacaaaggaatttcaa 11545218  T
Q  111 at 112  Q
    ||    
T  11545217 at 11545216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 19691923 - 19692066
Alignment:
Q  14 aatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaata 113  Q
    |||||||| |||||| |||  ||| | ||||||||||||| |||||| |||||  ||||||||||  ||||||  | ||||||||||| |||||| |||     
T  19691923 aatttgtcctcttctgactatgtgtagaaacaaacaaagagcttcaaggacaattgaaatgaaacgaataatttaatttgaagcaaaggaatttcgaatg 19692022  T
Q  114 atttttcattgacattaaccaaatcaagagacattccaacgtct 157  Q
    |  |||||  ||||||||||||||||||| ||||||||| ||||    
T  19692023 agctttcaacgacattaaccaaatcaagaaacattccaatgtct 19692066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 23601028 - 23601170
Alignment:
Q  35 gtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacca 134  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||| || |||| |||||||||| || |||||  ||| | |  |||  |||||||| ||    
T  23601028 gtgcaaaaacaaacaaagaaattcaaggacaaagggaatgaaacaaatcattctaattgaagcagaggaattttgaatgactactcaacgacattaatca 23601127  T
Q  135 aatcaagagacattccaacgtctctcatcgagattctcaagga 177  Q
    |||||    | |||||||||||||| ||| || ||||||||||    
T  23601128 aatcagacaatattccaacgtctctaatcaagcttctcaagga 23601170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 21747164 - 21747105
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 67  Q
    |||| |||||| ||||||||| ||  |||||| | |||||||||||||||||||||||||    
T  21747164 tagttcaatttatcttcttctgaccacgtgcagatacaaacaaagaacttcaaagacaaa 21747105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 13112394 - 13112575
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    ||||||| ||||||||||||| ||  |||||| | ||||||||||||||| || |||||  ||||| |||| | |||||||  ||||||||||  || ||    
T  13112394 tagtacactttgtcttcttctaaccacgtgcatatacaaacaaagaactttaacgacaattgaaataaaacgggtaattccttttgaagcaaatgaactt 13112493  T
Q  108 caaataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatg 189  Q
      ||| |  |||||  ||||||||||||||||| | | |||||||||||||| ||  || ||||||||||||| || |||||    
T  13112494 tgaatgacatttcaacgacattaaccaaatcaaaaaatattccaacgtctctgattaagcttctcaaggactctaaattatg 13112575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 26704635 - 26704488
Alignment:
Q  35 gtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaacca 134  Q
    ||||||||| |||||||||| ||||| |||||||  |||| || | || |||| ||  |||||||||||||||||||| | | ||||  |||||||||||    
T  26704635 gtgcaaaaataaacaaagaaattcaaggacaaagagaatgcaatatatcattctaaaagaagcaaagaaatttcaaatgactattcaacgacattaacca 26704536  T
Q  135 aatcaagagacattccaacgtctctcatcgagattctcaaggactcaa 182  Q
    | |||||  | ||||||  |||||| ||| ||  |||||| |||||||    
T  26704535 agtcaagcaatattccattgtctctgatcaagcatctcaatgactcaa 26704488  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 25563999 - 25564061
Alignment:
Q  6 agtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 68  Q
    ||||||| ||||||||||||||| ||  |||| | |||||||||||||| |||||| ||||||    
T  25563999 agtagtataatttgtcttcttctgaccacgtgtagaaacaaacaaagaaattcaaaaacaaag 25564061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 42256391 - 42256288
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    ||||||| ||||||||||| | ||  |||||| | ||||||||||||||||||  ||||| | |||| ||| | |||||| ||||| || |||| |||||    
T  42256391 tagtacattttgtcttcttgtaaccacgtgcagatacaaacaaagaacttcaagtacaaaaggaatg-aacgggtaattctaattgcagtaaaggaattt 42256293  T
Q  108 caaat 112  Q
    |||||    
T  42256292 caaat 42256288  T

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Target: scaffold0514 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 7337 - 7158
Alignment:
Q  11 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 110  Q
    ||||||||||| |||||| ||  |||||| |||||||||||||||||||| |||||  | |||||| |  |||||| || ||||||||||| |||||  |    
T  7337 tacaatttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaatcgaataatttcatttgaagcaaaggaattttga 7238  T
Q  111 ataatttttcattgacattaaccaaatcaagagacattccaacgtctctcatcgagattctcaaggactcaaatttatgt 190  Q
    || |  |||||  || |||| ||||||||||| |||||| | | ||| | ||  || ||||||| | |||||||||||||    
T  7237 atgacctttcaacgatattatccaaatcaagaaacattcaagcatctatgattaagcttctcaaagtctcaaatttatgt 7158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 28981300 - 28981163
Alignment:
Q  7 gtagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatt 106  Q
    |||||||| |||||||||||  ||||   |||| ||||||||||||||||||||||||||  | |||| ||| ||||||| |  ||||||||| |  |||    
T  28981300 gtagtacactttgtcttcttaccact---tgcagaaacaaacaaagaacttcaaagacaattgtaatg-aacggataatttcttttgaagcaaggggatt 28981205  T
Q  107 tcaaataatttttcattgacattaaccaaatcaagagacatt 148  Q
    |||||  | ||||||  ||||||||||||||||||| |||||    
T  28981204 tcaaacgacttttcaacgacattaaccaaatcaagaaacatt 28981163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 11609157 - 11609257
Alignment:
Q  56 ttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataatttttcattgacattaaccaaatcaagagacattccaacgt 155  Q
    ||||| |||||| | ||||||||  ||||||||||||||||||||| |||||| | ||  |||| |  ||||||||||| ||||||| | ||||||||||    
T  11609157 ttcaaggacaaaaggaatgaaacctataattccaattgaagcaaaggaatttcgagtatgtttttaacgacattaaccatatcaagaaatattccaacgt 11609256  T
Q  156 c 156  Q
    |    
T  11609257 c 11609257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 26822430 - 26822370
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaag 68  Q
    ||||||||||| |||||||||||||  ||| | |||||||||||||||||||| |||||||    
T  26822430 tagtacaatttatcttcttctcactatgtgtagaaacaaacaaagaacttcaaggacaaag 26822370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 1783114 - 1783011
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaattt 107  Q
    |||||||||||||| |||||| ||  |||| ||||| ||||||||||||||||  ||||||  |||| ||| |||||||||  ||| || |||| |||||    
T  1783114 tagtacaatttgtcctcttctgaccacgtgtaaaaataaacaaagaacttcaagaacaaagagaatg-aacggataattcccgttgtagtaaaggaattt 1783016  T
Q  108 caaat 112  Q
    |||||    
T  1783015 caaat 1783011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 14054374 - 14054430
Alignment:
Q  201 agatgcttttaacgtggtcttggcgctgaatgttcaccaacaatctctcacctatgc 257  Q
    |||| ||||||| |||||||||||| |||||||||| |||||||||| ||| |||||    
T  14054374 agatacttttaaggtggtcttggcgttgaatgttcatcaacaatctcccacgtatgc 14054430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 14364402 - 14364458
Alignment:
Q  201 agatgcttttaacgtggtcttggcgctgaatgttcaccaacaatctctcacctatgc 257  Q
    |||| ||||||| |||||||||||| |||||||||| |||||||||| ||| |||||    
T  14364402 agatacttttaaggtggtcttggcgttgaatgttcatcaacaatctcccacgtatgc 14364458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 27707316 - 27707375
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaa 67  Q
    |||||||||||||| |||||| ||  | || | |||||||||||||||||||||||||||    
T  27707316 tagtacaatttgtcctcttctgaccacatgtagaaacaaacaaagaacttcaaagacaaa 27707375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 32957672 - 32957606
Alignment:
Q  41 aaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttc 108  Q
    |||||||||||||||||||| |||||||  |||| |||||||||||||| ||  ||||||| ||||||    
T  32957672 aaacaaacaaagaacttcaaggacaaagataatg-aacagataattccagtttcagcaaaggaatttc 32957606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 137151 - 137004
Alignment:
Q  8 tagtacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattc-caattgaagcaaagaaatt 106  Q
    ||||||||||||||  ||||||||  |||||| | |||||||||||| ||||| |||||| ||||||||||| |  ||||  ||| ||||||||||||||    
T  137151 tagtacaatttgtcaccttctcaccacgtgcagatacaaacaaagaa-ttcaaggacaaaagaaatgaaacaaaccattcttaatagaagcaaagaaatt 137053  T
Q  107 tcaaataatttttcattgacattaaccaaatcaagagacattccaacgt 155  Q
    || ||| | |  |||   ||||||||||||||| |  ||||||||||||    
T  137052 tcgaattactactcaacaacattaaccaaatcatgctacattccaacgt 137004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 1363 - 1225
Alignment:
Q  11 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 110  Q
    |||| |||||| |||||| ||  |||||| |||||||||||||||||||| |||||  | |||||| |  |||||| || ||||||||||| |||||  |    
T  1363 tacagtttgtcctcttctgaccacgtgcagaaacaaacaaagaacttcaaggacaattggaatgaatcgaataatttcatttgaagcaaaggaattttga 1264  T
Q  111 ataatttttcattgacattaaccaaatcaagagacattc 149  Q
    || |  |||||  || |||| ||||||||||| ||||||    
T  1263 atgacctttcaacgatattatccaaatcaagaaacattc 1225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 4421 - 4286
Alignment:
Q  16 tttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaaataat 115  Q
    ||||||||||||| |   |||||| | |||||||| ||||||||| |||||| | |||||| | |||||||||   |  | ||||| |||||||||| |     
T  4421 tttgtcttcttctgatcacgtgcagatacaaacaa-gaacttcaaggacaaatggaatgaa-cggataattccttgttcaacaaaggaatttcaaatgac 4324  T
Q  116 ttttcattgacattaaccaaatcaagagacattccaac 153  Q
    ||||||  ||||||||||||||||||| ||||||||||    
T  4323 ttttcaacgacattaaccaaatcaagaaacattccaac 4286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 5997 - 5897
Alignment:
Q  11 tacaatttgtcttcttctcactccgtgcaaaaacaaacaaagaacttcaaagacaaaggaaatgaaacagataattccaattgaagcaaagaaatttcaa 110  Q
    |||| ||||||||||||| ||  |||| ||||||||| |||||||||||  |||||||  |||| || ||||||||| | ||  ||||||| ||||||||    
T  5997 tacagtttgtcttcttctgacaacgtgtaaaaacaaagaaagaacttcagggacaaagagaatg-aatagataattcaagtttcagcaaaggaatttcaa 5899  T
Q  111 at 112  Q
    ||    
T  5898 at 5897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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