View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13354_low_18 (Length: 204)
Name: NF13354_low_18
Description: NF13354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13354_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 42663389 - 42663575
Alignment:
| Q |
1 |
tttgtccaagaaggttgagcattagactaacaacaattgaaaaaatccagtttagatgtcatgggaagagaaactgcaataatgtaaagttcagccggat |
100 |
Q |
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| T |
42663389 |
tttgtccaagaaggttgagcattagactaacaacaattgaaaaagtccagtttagatgtcatgggaagagaaactgcaataatgtaaagttcagccggat |
42663488 |
T |
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| Q |
101 |
gataaaataaaacaaaggtttacgaacgga-nnnnnnnagtgtgctcctctcaaagtcttaagtttgattctctttgatgccgattt |
186 |
Q |
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| T |
42663489 |
aataaaataaaacaaaggtttaagtacggatttttgtgagtgtgctcctctcaaagttttaggtttgattttttttgatgtcgattt |
42663575 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 47541424 - 47541462
Alignment:
| Q |
138 |
agtgtgctcctctcaaagtcttaagtttgattctctttg |
176 |
Q |
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| T |
47541424 |
agtgtgctcctctcaaggttttaagtttgattctctttg |
47541462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 39714811 - 39714763
Alignment:
| Q |
138 |
agtgtgctcctctcaaagtcttaagtttgattctctttgatgccgattt |
186 |
Q |
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|||||||||||||||| |||| ||||||||||||| | | ||||||||| |
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| T |
39714811 |
agtgtgctcctctcaaggtctcaagtttgattctcctcggtgccgattt |
39714763 |
T |
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