View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13354_low_3 (Length: 538)

Name: NF13354_low_3
Description: NF13354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13354_low_3
NF13354_low_3
[»] chr4 (1 HSPs)
chr4 (9-520)||(44000055-44000566)
[»] chr2 (2 HSPs)
chr2 (40-332)||(8357531-8357822)
chr2 (347-379)||(30544415-30544447)
[»] chr3 (4 HSPs)
chr3 (40-332)||(39293904-39294195)
chr3 (376-520)||(5572527-5572672)
chr3 (132-226)||(35212717-35212811)
chr3 (337-377)||(44301685-44301724)
[»] chr8 (1 HSPs)
chr8 (201-261)||(26894377-26894437)
[»] chr7 (1 HSPs)
chr7 (337-378)||(34947630-34947670)
[»] chr5 (1 HSPs)
chr5 (348-377)||(32440274-32440303)
[»] chr1 (1 HSPs)
chr1 (347-380)||(49223939-49223972)
[»] chr6 (1 HSPs)
chr6 (337-377)||(17829062-17829101)


Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Original strand, 44000055 - 44000566
Alignment:
Q  9 aatatacgacatctttcctgaaggagttattaataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000055 aatatacgacatctttcctgaaggagttattaataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaa 44000154  T
Q  109 tgcttacataagcactcattttaggccaaggtccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44000155 tgcttacataagcactcattttaggccaaggtccattatcaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaac 44000254  T
Q  209 atgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000255 atgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctc 44000354  T
Q  309 acttccactcaataaatgatttttcgagacaaaccttaaaacgactattattttgagacggagggagtaacaagcaacgatctttaaacattacctgatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000355 acttccactcaataaatgatttttcgagacaaaccttaaaacgactattattttgagacggagggagtaacaagcaacgatctttaaacattacctgatg 44000454  T
Q  409 cagcatccacaaactttccatttataagatgctgtgtataatttattgaaacttgtggagtaatcaattcctgaacagctgcagcagtgctaaatctgtt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44000455 cagcatccacaaactttccatttataagatgctgtgtataatttattgaaacttgtggagtaatcaattcctgaacagctgcagcagtgctaaatctgtt 44000554  T
Q  509 tgtgtttatcaa 520  Q
    ||||||||||||    
T  44000555 tgtgtttatcaa 44000566  T

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Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 40 - 332
Target Start/End: Original strand, 8357531 - 8357822
Alignment:
Q  40 aataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaatgcttacataagcactcattttaggccaagg 139  Q
    ||||||| ||||||||||||| || |||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  8357531 aataagtcatcatcaacgtaattttaaaactaatataagttcatgtaagaaaggacactctgaaggaaatgcttacataagcattcattttaggccaagg 8357630  T
Q  140 tccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatca 239  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8357631 tccattatgaaaggcctcacgagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatca 8357730  T
Q  240 agtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatgattttt 332  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||| ||||||||||||||| |||||| |||||||||    
T  8357731 agtgttggaaatgttttccctgaaatcaaaa-aaactccatgtttaatctaagagcgtaatttgttctcacttccattcaatacatgattttt 8357822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 30544415 - 30544447
Alignment:
Q  347 aaacgactattattttgagacggagggagtaac 379  Q
    ||||||||||||||| |||||||||||||||||    
T  30544415 aaacgactattatttagagacggagggagtaac 30544447  T

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Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 40 - 332
Target Start/End: Complemental strand, 39294195 - 39293904
Alignment:
Q  40 aataagtaatcatcaacgtaaattgaaaactaatagaagttcatgcaagaaaggacactctgcaggaaatgcttacataagcactcattttaggccaagg 139  Q
    ||||||| ||||||||||||| || |||||| ||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  39294195 aataagtcatcatcaacgtaattttaaaactcatataagttcatgtaagaaaggacacgctgaaggaaatgcttacataagcactcattttaggtcaagg 39294096  T
Q  140 tccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccctgtgcgtggatca 239  Q
    |||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39294095 tccattatgaaaggcctcgcaagctgctgaaactgcacggttaatatcttcagcatcaccttcagcaacgtgagcaatcacttcccctgtgcgtggatca 39293996  T
Q  240 agtgttggaaatgttttccctggaatcaaaagaaactccgtgtttaatctaagagcctaacttgttctcacttccactcaataaatgattttt 332  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||||||||| | |||| |||||||||    
T  39293995 agtgttggaaatgttttccctgaaatcaaaag-aactccatgtttaatctaagagcgtaacttgttctcacttccatttaatacatgattttt 39293904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 376 - 520
Target Start/End: Complemental strand, 5572672 - 5572527
Alignment:
Q  376 taacaagcaa-cgatctttaaacattacctgatgcagcatccacaaactttccatttataagatgctgtgtataatttattgaaacttgtggagtaatca 474  Q
    |||||||||| | ||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||||| || |||||||||| |||||||||||    
T  5572672 taacaagcaaacaatctttatacattacctgatgcatcatccacaaattttccatttataagatgttgtgtatagttcattgaaacttatggagtaatca 5572573  T
Q  475 attcctgaacagctgcagcagtgctaaatctgtttgtgtttatcaa 520  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||    
T  5572572 attcctcaacagctgtagcattgctaaatctgtttgtgtttatcaa 5572527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 35212717 - 35212811
Alignment:
Q  132 ggccaaggtccattatcaaaggcctcacgagctgctgatactgcacggttaatatcttcagcatcaccttcagcaacatgagcaatcacttcccc 226  Q
    ||||| ||||| | |||||| ||||  | |||||| ||||||||||| || ||||||||   |||||||||||||||||||||||||||||||||    
T  35212717 ggccatggtccttcatcaaaagcctttctagctgcagatactgcacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttcccc 35212811  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 44301685 - 44301724
Alignment:
Q  337 acaaaccttaaaacgactattattttgagacggagggagta 377  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  44301685 acaaaccttaaa-cgaccattattttgagacggagggagta 44301724  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 26894437 - 26894377
Alignment:
Q  201 tcagcaacatgagcaatcacttcccctgtgcgtggatcaagtgttggaaatgttttccctg 261  Q
    ||||||||||||||||||||||||||||| | |||||| | ||||||||||||||| ||||    
T  26894437 tcagcaacatgagcaatcacttcccctgtccttggatccaatgttggaaatgttttacctg 26894377  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 378
Target Start/End: Original strand, 34947630 - 34947670
Alignment:
Q  337 acaaaccttaaaacgactattattttgagacggagggagtaa 378  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  34947630 acaaaccttaaa-cgactattatttagagacggagggagtaa 34947670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 377
Target Start/End: Original strand, 32440274 - 32440303
Alignment:
Q  348 aacgactattattttgagacggagggagta 377  Q
    ||||||||||||||||||||||||||||||    
T  32440274 aacgactattattttgagacggagggagta 32440303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 49223972 - 49223939
Alignment:
Q  347 aaacgactattattttgagacggagggagtaaca 380  Q
    ||||||||||||||| ||||||||||||||||||    
T  49223972 aaacgactattatttagagacggagggagtaaca 49223939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 17829062 - 17829101
Alignment:
Q  337 acaaaccttaaaacgactattattttgagacggagggagta 377  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  17829062 acaaaccttaaaa-gactattattttgagacggagagagta 17829101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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