View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13354_low_6 (Length: 383)
Name: NF13354_low_6
Description: NF13354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13354_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 49329024 - 49329381
Alignment:
| Q |
18 |
cttttagggttggttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttggctgatttggaggctgcactttgtc |
117 |
Q |
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| T |
49329024 |
cttttagggttggttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttggctgatttggaggctgcactttgtc |
49329123 |
T |
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| Q |
118 |
tttgcactgcacttaaggctaacgtgcttgggatcaacctgaatgtgcctatcactctcagcttgctccttagtgcatgtcaaaaaaccgtccctcctgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49329124 |
tttgcactgcacttaaggctaacgtgcttgggatcaacctgaatgtgcctatcactctcagcttgctccttagtgcatgtcaaaaaaccgtccctcctgg |
49329223 |
T |
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| Q |
218 |
tttccaatgtccctaaggattccaattaggttgtgtctcattgttgaagaagtatggatgtgcactaatagttgtttctataagagacaaatcgttaaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
49329224 |
tttccaatgtccctaaggattccaattaggttgtgtctcattgttgaataagtatgtatgtgcactaatagttgtttctatacgaggcaaatcgttaaca |
49329323 |
T |
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| Q |
318 |
acacactttctagtactttctctgtaacattttttatgttattggttgaaattgatga |
375 |
Q |
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| T |
49329324 |
acacactttctaatactttctctgtaacattttttatgttattggttgaaattcatga |
49329381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 49331301 - 49331544
Alignment:
| Q |
19 |
ttttagggttggttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttggctgatttggaggctgcactttgtct |
118 |
Q |
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| T |
49331301 |
ttttaggactggttaatgttgttgttggaaatcctgcttcaggtagtaattgttgtgcaataatcaaaggtttggctgatttggatgctgcactttgtct |
49331400 |
T |
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| Q |
119 |
ttgcactgcacttaaggctaacgtgcttgggatcaacctgaatgtgcctatcactctcagcttgctccttagtgcatgtcaaaaaaccgtccctcctggt |
218 |
Q |
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|||||||||| ||||||| || |||||||| || ||| |||| || ||| |||| |||| || | ||||| |||| ||||||||||| ||||||||||| |
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| T |
49331401 |
ttgcactgcaattaaggccaatgtgcttggaataaacttgaacgtacctctcaccctcacctggatccttggtgcttgtcaaaaaacaatccctcctggt |
49331500 |
T |
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| Q |
219 |
ttccaatgtccctaaggattccaattaggttgtgtctcattgtt |
262 |
Q |
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| T |
49331501 |
tttcaatgtgcctaaggattcaaattaggttgtatctcattgtt |
49331544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 2578408 - 2578214
Alignment:
| Q |
30 |
gttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttggctgatttggaggctgcactttgtctttgcactgcac |
129 |
Q |
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| T |
2578408 |
gttaatgttattgttggaagtcctgcttca---agcaactgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgcta |
2578312 |
T |
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| Q |
130 |
ttaaggctaacgtgcttgggatcaacctgaatgtgcctatcactctcagcttgctccttagtgcatgtcaaaaaaccgtccctcctggtttccaatgt |
227 |
Q |
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||||||||||||| ||||| |||||| ||||||||||| |||| || || | || |||||||| ||||||||| | || ||| ||||||||||||| |
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| T |
2578311 |
ttaaggctaacgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgt |
2578214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 2599911 - 2599717
Alignment:
| Q |
30 |
gttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttggctgatttggaggctgcactttgtctttgcactgcac |
129 |
Q |
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| T |
2599911 |
gttaatgttattgttggaattcctgcttca---agcaattgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgcta |
2599815 |
T |
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| Q |
130 |
ttaaggctaacgtgcttgggatcaacctgaatgtgcctatcactctcagcttgctccttagtgcatgtcaaaaaaccgtccctcctggtttccaatgt |
227 |
Q |
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||||||||||||| ||||| |||||| ||||||||||| |||| || || | || |||||||| ||||||||| | || ||| ||||||||||||| |
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| T |
2599814 |
ttaaggctaacgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgt |
2599717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 2592157 - 2591963
Alignment:
| Q |
30 |
gttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttggctgatttggaggctgcactttgtctttgcactgcac |
129 |
Q |
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||||||||| || |||||| |||| ||||| || || |||||| |||||||| | ||||||||||||||||| || ||| |||||||||| || || |
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| T |
2592157 |
gttaatgttattgttggaagtcctgcttca---agcaagtgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgcta |
2592061 |
T |
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| Q |
130 |
ttaaggctaacgtgcttgggatcaacctgaatgtgcctatcactctcagcttgctccttagtgcatgtcaaaaaaccgtccctcctggtttccaatgt |
227 |
Q |
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|||||||||| || ||||| |||||| ||||||||||| |||| || || | || |||||||| ||| ||||| | || ||| ||||||||||||| |
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| T |
2592060 |
ttaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtgaaaaatctgttcctaatggtttccaatgt |
2591963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 2608447 - 2608253
Alignment:
| Q |
30 |
gttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttggctgatttggaggctgcactttgtctttgcactgcac |
129 |
Q |
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||||||||| || |||||| |||| ||||| || || |||||||||||| || | ||||||| |||||| || || ||| |||| ||||| ||||| |
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| T |
2608447 |
gttaatgttattgttggaagtcctgcttca---agcaagtgttgtgcattgcttcaaggtttggttgatttagatgcagcaatttgcctttgtactgcta |
2608351 |
T |
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| Q |
130 |
ttaaggctaacgtgcttgggatcaacctgaatgtgcctatcactctcagcttgctccttagtgcatgtcaaaaaaccgtccctcctggtttccaatgt |
227 |
Q |
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|||||||||| || ||||| |||||| ||||||| |||||||| ||||| | || |||||||| ||| ||||| | || ||| | |||||||||||| |
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| T |
2608350 |
ttaaggctaatgttcttggtatcaacttgaatgttcctatcacactcagtctcctacttagtgcttgtgaaaaatctgttccttcaggtttccaatgt |
2608253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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