View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13354_low_7 (Length: 329)
Name: NF13354_low_7
Description: NF13354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13354_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 6624191 - 6623894
Alignment:
| Q |
17 |
acatttggtttaatgtgcagctcatacattttctggaagagccacgatatgtagtgatggtcttgtcgtcccctcctatccttcattgtgtc-catgctt |
115 |
Q |
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| T |
6624191 |
acatttggtttaatgtgcagctcatacattttctggaagagccacgatatgtagtgatggtcttgttgtcccctcctatccttcattgtgtcacatgctt |
6624092 |
T |
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| Q |
116 |
tttcagcagcaagttgctcgaacatcttcaagatccggcggtcatccccggccttattctaaaaagcatcatcgataagcatagaagaagattgttcact |
215 |
Q |
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| T |
6624091 |
tttcagcagcatgttgctcgaacatcttcaagatccgg---tcatccccggccttattctaaaaagcatcatcgataagcatagaagaagattgttcact |
6623995 |
T |
|
| Q |
216 |
cggatactcaatggattgcgaagaacaatgaactccatattccaaagttggccggaatgcatcaattatggagttgaaagtcaccacatttggcttgatt |
315 |
Q |
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| T |
6623994 |
cgtatactcaatggattgcgaagaacaatgaactccatattccaaagttggccggaatgcatcaattttggagttgaaagtcaccaaatttggcttgatt |
6623895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 5594111 - 5594414
Alignment:
| Q |
17 |
acatttggtttaatgtgcagctcatacattttctggaagagccacgatatgtagtgatggtcttgtcgtcccctcctatccttcattgtgt--ccatgct |
114 |
Q |
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|||||||||||||||| |||||||| |||||| |||||||||||| ||||| |||| ||||||||||||||| ||||||||||| | | | ||| ||| |
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| T |
5594111 |
acatttggtttaatgttcagctcatgcattttttggaagagccacaatatgcagtgttggtcttgtcgtcccttcctatccttctctctatgacca-gct |
5594209 |
T |
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| Q |
115 |
ttttcagcagcaagttgctcgaacatcttcaagatccggcggtcatccccggccttattctaaaaagcatcatcgataagcatagaagaagattgttcac |
214 |
Q |
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| T |
5594210 |
ttttcagcagcaagctgctcgaacattttcaagatccgg---tcatcccctgtcttattctgaaaagcaccatcgataagcatagaagacaattgttcag |
5594306 |
T |
|
| Q |
215 |
tcggatactcaatggattgcgaagaacaatgaactccatattccaaagttggc------cggaatgcatcaattatggagttgaaagtcaccacatttgg |
308 |
Q |
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| |||||||||| || ||| ||||||| |||||| |||||||||| ||||||| | | | ||||||||||||||||||||||| || |||||||| |
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| T |
5594307 |
ttggatactcaacggcttgtgaagaaccatgaaccccatattccagagttggcgattgtctggaggcatcaattatggagttgaaagtgacaacatttgg |
5594406 |
T |
|
| Q |
309 |
cttgattc |
316 |
Q |
| |
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|||||||| |
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| T |
5594407 |
cttgattc |
5594414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 5606801 - 5606498
Alignment:
| Q |
17 |
acatttggtttaatgtgcagctcatacattttctggaagagccacgatatgtagtgatggtcttgtcgtcccctcctatccttcattg--tgtccatgct |
114 |
Q |
| |
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|||||||||||||||| |||||||| |||||| |||||||||||| ||||| |||| | |||||||||||| || |||| |||| || || ||| ||| |
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| T |
5606801 |
acatttggtttaatgttcagctcatgcattttttggaagagccacaatatgcagtgtttgtcttgtcgtccacttctattcttctttaaatgacca-gct |
5606703 |
T |
|
| Q |
115 |
ttttcagcagcaagttgctcgaacatcttcaagatccggcggtcatccccggccttattctaaaaagcatcatcgataagcatagaagaagattgttcac |
214 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||| ||||| | |||||||| ||||||| |||| |||| |||| ||| ||||||||| |
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| T |
5606702 |
ttttcagcagcaagttgctcgaacatcttcaaaatc---cggtcctcccccggcttattctgaaaagcaccatcaataacaataggagacgattgttcaa |
5606606 |
T |
|
| Q |
215 |
tcggatactcaatggattgcgaagaacaatgaactccatattccaaagttggc------cggaatgcatcaattatggagttgaaagtcaccacatttgg |
308 |
Q |
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||||||| ||||||| | ||||| | || ||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||| |
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| T |
5606605 |
tcggatagtcaatggcatcagaagatccattaactccatactccaaagttggcgattgttgagatgcatcaattatggagttgaaagtgaccacatttgg |
5606506 |
T |
|
| Q |
309 |
cttgattc |
316 |
Q |
| |
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||| |||| |
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| T |
5606505 |
ctttattc |
5606498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 5589150 - 5589200
Alignment:
| Q |
17 |
acatttggtttaatgtgcagctcatacattttctggaagagccacgatatg |
67 |
Q |
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|||||||||||||||| |||||||| |||||| |||||||||||| ||||| |
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| T |
5589150 |
acatttggtttaatgttcagctcatgcattttttggaagagccacaatatg |
5589200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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