View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13354_low_8 (Length: 307)
Name: NF13354_low_8
Description: NF13354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13354_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 4651074 - 4651353
Alignment:
| Q |
1 |
ttgtaacattaattttatgtagtccttatttaannnnnnnnnaagccaaactgaagttcaataccaaaattagggttagagtatgnnnnnnnnnngatta |
100 |
Q |
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| T |
4651074 |
ttgtaacattaattttatgtagtcattatttaatttttttt-aagccaaactgaagttcaataccaaaattagggttagagtatgaaaaaaaaaagatta |
4651172 |
T |
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| Q |
101 |
gcatacccaaatccatgtgtggcataataaggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagag |
200 |
Q |
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| T |
4651173 |
gcatacccaaatccatgtgtggcataataaggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagag |
4651272 |
T |
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| Q |
201 |
ttctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaacat |
281 |
Q |
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| T |
4651273 |
ttctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaacat |
4651353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 100 - 281
Target Start/End: Complemental strand, 23679018 - 23678829
Alignment:
| Q |
100 |
agcatacccaaatccatgtgtggcataataa----ggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttt----ta |
191 |
Q |
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| T |
23679018 |
agcatacccaaatccatgtgtagcataattaaattggaaggttagagagtgtagttttatcaatgtcaaagacccaaatgtctctaccatctttctttta |
23678919 |
T |
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| Q |
192 |
gattgagagttctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaacat |
281 |
Q |
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| T |
23678918 |
gattgagagttctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatgtagtttccaacat |
23678829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 278
Target Start/End: Original strand, 4646617 - 4646793
Alignment:
| Q |
102 |
catacccaaatccatgtgtggcataataaggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagt |
201 |
Q |
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||||||||||||| ||| | |||||||| ||||| || || |||| |||||||||||| ||||| ||||| | |||| ||||| | ||| ||| ||||| |
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| T |
4646617 |
catacccaaatccgtgtttagcataatatggaagatttgatagtgaagtttcatcaatatcaaaaacccatatgtctttaccagttgttatattaagagt |
4646716 |
T |
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| Q |
202 |
tctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaa |
278 |
Q |
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| T |
4646717 |
ctttgcatagaaataaccttcacggttaactgctttagagtcagctctatattgatcacctaacatatagttcccaa |
4646793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 278
Target Start/End: Complemental strand, 23699225 - 23699049
Alignment:
| Q |
102 |
catacccaaatccatgtgtggcataataaggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagt |
201 |
Q |
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||||||||||||| ||| | |||||||| ||||| || || || | |||||||||||| ||||| ||||| | |||| ||||| | ||| ||| ||||| |
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| T |
23699225 |
catacccaaatccgtgtttagcataatatggaagatttgatagggaagtttcatcaatatcaaaaacccatatgtctttaccagttgttatattaagagt |
23699126 |
T |
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| Q |
202 |
tctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaa |
278 |
Q |
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| T |
23699125 |
ctttgcatagaaataaccttcacggttaactgctttagagtcagctctatattgatcacctaacatatagttcccaa |
23699049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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