View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13355_high_4 (Length: 388)
Name: NF13355_high_4
Description: NF13355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13355_high_4 |
 | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0140 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 19066 - 18709
Alignment:
| Q |
16 |
ataagatcagtaacatttccgtataccattcaatccaattcacaaatttgcaatctcttcacatcaatactactgaagggttgaactctgaagctctaga |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19066 |
ataagttcagtaacatttccgtataccattcaatccaattcacaaatttgcaaccccttcacatcaatactactaaagggttgaactctgaagctctaga |
18967 |
T |
|
| Q |
116 |
aactaaatgacttaaatgtataaagctaaactgttccaaacaaaacaggcacaactaacatcaatgcacaattaacataatatcattaacatcaaaataa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
18966 |
aactaaatgacttaaatgtataaagctaaaatgttccaaacaaaacaggcacgaagac--tcaaatcacccacaacataatatcattaacatcaaaataa |
18869 |
T |
|
| Q |
216 |
tgtcaatttatgggataatgcaaaagtgataagtaattagatagacgaattgctaaccttgttaacattaagattaggaccccaagcatgaagaaaactg |
315 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18868 |
tgtcaatttaagggataatgcaaaagtgataagtaattagatagacgaattgctaaccttgttaacattaagattaggaccccaagcatgaagaaaactg |
18769 |
T |
|
| Q |
316 |
ttgaaataatcgaacaactccaaagaagagccgaaag-ttttgtaacccaatttcacagg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18768 |
ttgaaataatcgaacaactccaaagaagagccgaaagtttttgtaacccaatttcacagg |
18709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University