View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13355_high_5 (Length: 358)

Name: NF13355_high_5
Description: NF13355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13355_high_5
NF13355_high_5
[»] chr3 (3 HSPs)
chr3 (1-341)||(8342433-8342773)
chr3 (194-339)||(26728103-26728248)
chr3 (1-35)||(8342886-8342920)
[»] chr1 (5 HSPs)
chr1 (4-339)||(11544316-11544651)
chr1 (1-339)||(44612557-44612892)
chr1 (4-167)||(35899312-35899475)
chr1 (102-339)||(16818079-16818316)
chr1 (215-336)||(44145363-44145484)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-140)||(29093-29232)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-140)||(169560-169699)
scaffold0017 (216-325)||(174285-174394)
[»] chr5 (1 HSPs)
chr5 (55-113)||(29507458-29507516)
[»] chr2 (3 HSPs)
chr2 (243-287)||(12249350-12249394)
chr2 (259-339)||(29228084-29228164)
chr2 (259-339)||(29341383-29341463)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 8342773 - 8342433
Alignment:
Q  1 ccgatgctcgtgggtatttctccaattaatttatttccatcaagtatcaattccctcaaagatgataggactgaaaggtcaggtaacatgcccgaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8342773 ccgatgctcgtgggtatttctccaattaatttatttccatcaagtatcaattccctcaaagatgataggactgaaaggtcaggtaacatgcccgaaattt 8342674  T
Q  101 gattattcgataagaatagctcctgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagtt 200  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8342673 gattatacgataaggatagctcctgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagtg 8342574  T
Q  201 gttatcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8342573 gttatcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagt 8342474  T
Q  301 gaatgcattttgttgccaaaatcatgatgaatggtaccttt 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8342473 gaatgcattttgttgccaaaatcatgatgaatggtaccttt 8342433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 194 - 339
Target Start/End: Complemental strand, 26728248 - 26728103
Alignment:
Q  194 tcaagttgttatcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaatt 293  Q
    |||||||||||||||||||| ||||| | | ||||||||||||| ||||||||||||||||||| |||||||||||| ||||  | ||||| | || |||    
T  26728248 tcaagttgttatcaaaagctgcaaatttttgcaaggtgcatatactcccaatggattttgggatcttgccttctagactgttgtctgagagttcgagatt 26728149  T
Q  294 cacaagtgaatgcattttgttgccaaaatcatgatgaatggtacct 339  Q
    |||||||||||||||| ||||||||||||||| | |||| ||||||    
T  26728148 cacaagtgaatgcattatgttgccaaaatcatcaggaatagtacct 26728103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8342920 - 8342886
Alignment:
Q  1 ccgatgctcgtgggtatttctccaattaatttatt 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  8342920 ccgatgctcgtgggtatttctccaattagtttatt 8342886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 339
Target Start/End: Original strand, 11544316 - 11544651
Alignment:
Q  4 atgctcgtgggtatttctccaattaatttatttccatcaagtatcaattccctcaaagatgataggactgaaaggtcaggtaacatgcccgaaatttgat 103  Q
    |||||||||||||||||||||||||| |||||  |||| || |||||     |||||||||| |||| ||| | |||||||| | |||| ||||  ||||    
T  11544316 atgctcgtgggtatttctccaattaaattattgtcatctagaatcaaccatgtcaaagatgagaggattgacaagtcaggtatcgtgccagaaaactgat 11544415  T
Q  104 tattcgataagaatagctcctgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagttgtt 203  Q
    ||||||||||| |||| || |||| ||||||  ||||||| |||||  | || |||||||||||||||||| || |||||||  |||| ||||||  |||    
T  11544416 tattcgataagtataggtcttgtaacgaggaagcatttccaatgcatcgtgaatagttattatggatgataaaatctgaaatccctccactcaagcggtt 11544515  T
Q  204 atcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaa 303  Q
    ||||  ||||||||||  || |||||||||||| || ||||||||||||||||| |||||||||||| ||||  | |||||||||| || |||||||||     
T  11544516 atcacgagcttcaaatgactgcaaggtgcatatgtttccaatggattttgggatcttgccttctagactgttctctgagagatagagatgcacaagtgat 11544615  T
Q  304 tgcattttgttgccaaaatcatgatgaatggtacct 339  Q
    ||||||  |||||||||||||| | |||||||||||    
T  11544616 tgcattacgttgccaaaatcatcaggaatggtacct 11544651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 44612892 - 44612557
Alignment:
Q  1 ccgatgctcgtgggtatttctccaattaatttatttccatcaagtatcaattccctcaaagatgataggactgaaaggtcaggtaacatgcccgaaattt 100  Q
    |||||||||| ||||||||||||| ||||||||||  ||| ||| | |||    |||||||| || |||| ||||||||| |||||| |||||||||| |    
T  44612892 ccgatgctcgcgggtatttctccagttaatttattgacattaagaaccaacagtctcaaagacgagaggattgaaaggtctggtaacttgcccgaaatct 44612793  T
Q  101 gattattcgataagaatagctcctgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagtt 200  Q
     ||||||| |||   |||| ||||||| ||| |||| |||||| ||||| ||||| |||||| ||  | | ||| || || |   || ||| |||||       
T  44612792 cattattccatagccatagttcctgtaacgatgatagatttccaatgcagtgagaatagttactagaggtcataaaatctaa---ttgtccactcaatcg 44612696  T
Q  201 gttatcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagt 300  Q
    |||||||   || |||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||| |  | ||||| || | | |||||     
T  44612695 gttatcagttgcatcaaatgtctccaaggtgcaaatattcccaattgattttgggatcttgccttctagatagttgcttgtgagattgagacttacaagc 44612596  T
Q  301 gaatgcattttgttgccaaaatcatgatgaatggtacct 339  Q
    ||||||||| |||| |||||||||| | |||||||||||    
T  44612595 gaatgcattatgtttccaaaatcattaggaatggtacct 44612557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 35899475 - 35899312
Alignment:
Q  4 atgctcgtgggtatttctccaattaatttatttccatcaagtatcaattccctcaaagatgataggactgaaaggtcaggtaacatgcccgaaatttgat 103  Q
    |||||||||||||||||||||| ||||||||||||| ||||   |||    ||||||||||||| || |||||| |  ||||||||||| | ||||||||    
T  35899475 atgctcgtgggtatttctccaaataatttatttccagcaagatacaacattctcaaagatgataagattgaaagatttggtaacatgccagtaatttgat 35899376  T
Q  104 tattcgataagaatagctcctgtagcgaggatacatttccgatgcaatgagagtagttattatg 167  Q
    |||| |||||| |||  ||||||| ||||||||||||||| ||||| |  || |||||||||||    
T  35899375 tatttgataaggataattcctgtaacgaggatacatttccaatgcagttcgaatagttattatg 35899312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 339
Target Start/End: Complemental strand, 16818316 - 16818079
Alignment:
Q  102 attattcgataagaatagctcctgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagttg 201  Q
    |||||| |||||| ||||  ||||||| ||||||||||||||  ||||  || | | |||||||||||||||| || ||||||| || || ||||||| |    
T  16818316 attatttgataaggatagtacctgtagtgaggatacatttccagtgcagcgataattgttattatggatgataaaatctgaaatctccccactcaagtgg 16818217  T
Q  202 ttatcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtg 301  Q
    | ||||  |||   ||||   | ||||||||||||||||||||| ||||||||||| || ||||| ||| | ||    ||||||| || ||| |||||||    
T  16818216 taatcattagccctaaatgcttgcaaggtgcatatattcccaatcgattttgggatctttccttcaagactattgtaggagagatcgacattaacaagtg 16818117  T
Q  302 aatgcattttgttgccaaaatcatgatgaatggtacct 339  Q
    |||||||| |||  ||||||||||   |||||||||||    
T  16818116 aatgcattatgtaaccaaaatcatctagaatggtacct 16818079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 336
Target Start/End: Complemental strand, 44145484 - 44145363
Alignment:
Q  215 caaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgtt 314  Q
    ||||| ||| ||||||||| ||||||||||| ||||||||||| || ||||||||||||||    |||||||  | | | ||||| ||||||||| ||||    
T  44145484 caaatgtctgcaaggtgcaaatattcccaattgattttgggatctttccttctagattgttgtatgagagatcaagacttacaagcgaatgcattatgtt 44145385  T
Q  315 gccaaaatcatgatgaatggta 336  Q
     |||||||||| | ||||||||    
T  44145384 tccaaaatcatcaggaatggta 44145363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 29093 - 29232
Alignment:
Q  1 ccgatgctcgtgggtatttctccaattaatttatt-tccatcaagtatcaattccctcaaagatgataggactgaaaggtcaggtaacatgcccgaaatt 99  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  ||||    ||||||||||| |||  ||||| ||| ||||||||||| |||||     
T  29093 ccgatgctcgtgggtatttctccaattaatttattgtcca-caagactcaacagtctcaaagatgagaggtttgaaaagtccggtaacatgcctgaaatc 29191  T
Q  100 tgattattcgataagaatagctcctgtagcgaggatacatt 140  Q
    | ||||||||||||  |||| ||||||| | | ||||||||    
T  29192 tcattattcgataaccatagttcctgtaacaatgatacatt 29232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 169699 - 169560
Alignment:
Q  1 ccgatgctcgtgggtatttctccaattaatttatt-tccatcaagtatcaattccctcaaagatgataggactgaaaggtcaggtaacatgcccgaaatt 99  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||  ||||    ||||||||||| |||  ||||| ||| ||||||||||| |||||     
T  169699 ccgatgctcgtgggtatttctccaattaatttattgtcca-caagactcaacagtctcaaagatgagaggtttgaaaagtccggtaacatgcctgaaatc 169601  T
Q  100 tgattattcgataagaatagctcctgtagcgaggatacatt 140  Q
    | ||||||||||||  |||| ||||||| | | ||||||||    
T  169600 tcattattcgataaccatagttcctgtaacaatgatacatt 169560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 325
Target Start/End: Complemental strand, 174394 - 174285
Alignment:
Q  216 aaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttg 315  Q
    |||| ||||||||||||| ||||||||||  ||||||||||| || ||||||| | |||| |  |||||||  | | | ||||||||||||||| ||||     
T  174394 aaatgtctccaaggtgcaaatattcccaactgattttgggatctttccttctaaactgttccatgagagatcaagacttacaagtgaatgcattatgttt 174295  T
Q  316 ccaaaatcat 325  Q
    ||||||||||    
T  174294 ccaaaatcat 174285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 29507458 - 29507516
Alignment:
Q  55 ctcaaagatgataggactgaaaggtcaggtaacatgcccgaaatttgattattcgataa 113  Q
    ||||||||||| ||| |||||||||||||||||| ||| ||||| | ||||| ||||||    
T  29507458 ctcaaagatgaaagggctgaaaggtcaggtaacaagcctgaaatctcattatgcgataa 29507516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 12249350 - 12249394
Alignment:
Q  243 aatggattttgggatattgccttctagattgttaccagagagata 287  Q
    |||||||||||| |||||||||| ||| ||||||||||| |||||    
T  12249350 aatggattttggaatattgccttgtagcttgttaccagatagata 12249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 29228084 - 29228164
Alignment:
Q  259 ttgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatcatgatgaatggtacct 339  Q
    |||||||||||| ||||||  || |||| || | | ||||||||||||||| |||| |||||||||  | |||||||||||    
T  29228084 ttgccttctagactgttacttgacagattgagacttacaagtgaatgcattatgttcccaaaatcaccaggaatggtacct 29228164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 29341383 - 29341463
Alignment:
Q  259 ttgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatcatgatgaatggtacct 339  Q
    |||||||||||| ||||||  || |||| || | | ||||||||||||||| |||| |||||||||  | |||||||||||    
T  29341383 ttgccttctagactgttacttgacagattgagacttacaagtgaatgcattatgttcccaaaatcaccaggaatggtacct 29341463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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