View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13355_low_2 (Length: 454)
Name: NF13355_low_2
Description: NF13355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13355_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 34261459 - 34261672
Alignment:
| Q |
13 |
agcagagaccgcactcgatagggacatggatgcaccaactttgagccaaggctggtgccaatagcttaattgttcgaccatcacctattcaaaacaactc |
112 |
Q |
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| T |
34261459 |
agcagggaccgcactcgatagggacatggatgcaccatctttgagccaaggctggtgccaatagcttaattgttcgaccatcacctattcaaaacaactc |
34261558 |
T |
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| Q |
113 |
ttgctatgcaaatactacgccatgaaaaactcggactgtggccaatgttgacttccatgaggtcacatctggaaaaatatttggctttgagaaaacgcga |
212 |
Q |
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| T |
34261559 |
ttgctatgcaaatactacgccatgaaaaactcggactgtggccaatgttgacttccatgaggtcacatatggaaaaatatttggctttgagaaaacgcga |
34261658 |
T |
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| Q |
213 |
taccatgacgttag |
226 |
Q |
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| T |
34261659 |
taccatgacgttag |
34261672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 226 - 437
Target Start/End: Original strand, 34261711 - 34261928
Alignment:
| Q |
226 |
gcttagttgaatgcataaaggtttgctaaaccccgaaccaccttgggttttatggattgaaactttctcccaaaacaactatttgattagactcgctacg |
325 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34261711 |
gcttagttgaatgcataaaggtttgctaaaccccaaaccaccttgggttttatggattgaaactttctcccaaaacaactatttgattagactcactacg |
34261810 |
T |
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| Q |
326 |
gtaactggtggaaatttatacattag------tctaaatctaaatctaaacgaattgctataattgaaaattaatttatgataacaaatttgataacttt |
419 |
Q |
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| T |
34261811 |
gtaactggtggaaatttatacattagtctaaatctaaatctaaatctaaacgaattgctataattgaaaattaatttatgataacaaatttgataacttt |
34261910 |
T |
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| Q |
420 |
tagagtagtgatatatgt |
437 |
Q |
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| T |
34261911 |
tagagtagtgatatatgt |
34261928 |
T |
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