View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13355_low_6 (Length: 376)
Name: NF13355_low_6
Description: NF13355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13355_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 7896806 - 7896944
Alignment:
| Q |
134 |
ccaaagtcatatatatacaatttacaaacactctgcttatgactttcttgctactcctttacatcctcagaatctcatgaagcattggctcaatatgctg |
233 |
Q |
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| T |
7896806 |
ccaaagtcatatatatacaatttacaaacactctgcttatgactttcttgctactcctttacaccctcagaatctcatgaagcattggctcaatatgctg |
7896905 |
T |
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| Q |
234 |
cgacagaccccatcatttgacccatttagttacacgtac |
272 |
Q |
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| T |
7896906 |
cgacagacaccatcatttgagccatttagttatacgtac |
7896944 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 7896699 - 7896764
Alignment:
| Q |
19 |
ataaacttcaagcttcattgagttctacaaagatttaagagtacataatccatatttacaatagtc |
84 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7896699 |
ataagcttcaagcttcattgagttctacaaagatttaagagtacataatccatatttacaatagtc |
7896764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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