View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13355_low_8 (Length: 233)
Name: NF13355_low_8
Description: NF13355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13355_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 48924204 - 48923991
Alignment:
| Q |
6 |
tgtcttcaaaacataaatgaatgatattattattattagacttattttcgatggtaattcactcccaatggacatccgacatccattttccatatattca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48924204 |
tgtcttcaaaacataaatgaatgatattattattattagacttattttcgatggtaattcactcccaatggacatccgacatccattttccatatattca |
48924105 |
T |
|
| Q |
106 |
catatttagaatattaaagctatgtttgttgttttttgaatgctgaaagcgaagttctgtgatggctgcctatgtcattttctttcatttgcagcaaagc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48924104 |
catatttagaatattaaagctatgtttgttgttttttgaatgctgaaagtgaagttctgtgatggctgcctatgtcattttctttcatttgcagcaaagc |
48924005 |
T |
|
| Q |
206 |
taaacaaaatagct |
219 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
48924004 |
taaacaaaacagct |
48923991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 48912644 - 48912591
Alignment:
| Q |
157 |
aagttctgtgatggctgcctatgtcattttctttcatttgcagcaaagctaaac |
210 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48912644 |
aagtactgtgatggctacctatgtcattttctttcatttatagcaaagctaaac |
48912591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 28656346 - 28656303
Alignment:
| Q |
169 |
ggctgcctatgtcattttctttcatttgcagcaaagctaaacaa |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28656346 |
ggctggctatgtcattttctttcatttgcagcaaagctaaacaa |
28656303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 31281766 - 31281723
Alignment:
| Q |
169 |
ggctgcctatgtcattttctttcatttgcagcaaagctaaacaa |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31281766 |
ggctggctatgtcattttctttcatttgcagcaaagctaaacaa |
31281723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 55424949 - 55424992
Alignment:
| Q |
169 |
ggctgcctatgtcattttctttcatttgcagcaaagctaaacaa |
212 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55424949 |
ggctggctatgtcattttctttcatttgtagcaaagctaaacaa |
55424992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University