View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13356_high_1 (Length: 601)

Name: NF13356_high_1
Description: NF13356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13356_high_1
NF13356_high_1
[»] chr1 (7 HSPs)
chr1 (19-232)||(7409888-7410100)
chr1 (412-450)||(794955-794993)
chr1 (411-450)||(18808819-18808858)
chr1 (411-448)||(1585901-1585938)
chr1 (416-450)||(7409832-7409866)
chr1 (416-449)||(26653950-26653983)
chr1 (416-448)||(24909519-24909551)
[»] chr4 (7 HSPs)
chr4 (411-450)||(21555421-21555460)
chr4 (416-450)||(23249516-23249550)
chr4 (416-450)||(27733422-27733456)
chr4 (416-450)||(36609422-36609456)
chr4 (411-450)||(827870-827909)
chr4 (411-450)||(12701079-12701118)
chr4 (411-450)||(56100147-56100186)
[»] chr7 (3 HSPs)
chr7 (413-450)||(41326084-41326121)
chr7 (411-450)||(40337075-40337114)
chr7 (416-450)||(8163652-8163686)
[»] scaffold0306 (1 HSPs)
scaffold0306 (411-450)||(13065-13104)
[»] scaffold0302 (1 HSPs)
scaffold0302 (411-450)||(18512-18551)
[»] scaffold0152 (1 HSPs)
scaffold0152 (411-450)||(22223-22262)
[»] chr8 (6 HSPs)
chr8 (411-450)||(4623859-4623898)
chr8 (411-450)||(23403639-23403678)
chr8 (411-450)||(30204657-30204696)
chr8 (411-450)||(36470144-36470183)
chr8 (414-450)||(16656022-16656058)
chr8 (421-450)||(36046538-36046567)
[»] chr3 (8 HSPs)
chr3 (411-450)||(36404231-36404270)
chr3 (416-450)||(47599410-47599444)
chr3 (411-450)||(16353498-16353537)
chr3 (411-450)||(29360523-29360562)
chr3 (411-450)||(35534523-35534562)
chr3 (415-450)||(39392002-39392037)
chr3 (411-450)||(45603025-45603064)
chr3 (411-450)||(46487310-46487349)
[»] chr2 (12 HSPs)
chr2 (411-450)||(30609695-30609734)
chr2 (411-450)||(30757193-30757232)
chr2 (416-450)||(28107497-28107531)
chr2 (416-450)||(37060088-37060122)
chr2 (411-450)||(14786275-14786314)
chr2 (411-450)||(21423406-21423445)
chr2 (411-450)||(27004490-27004529)
chr2 (416-450)||(4382253-4382287)
chr2 (416-450)||(6974526-6974560)
chr2 (413-450)||(24475941-24475978)
chr2 (416-448)||(15070401-15070433)
chr2 (417-449)||(27969534-27969566)
[»] chr5 (5 HSPs)
chr5 (417-450)||(38451048-38451081)
chr5 (411-450)||(3729342-3729381)
chr5 (411-450)||(8159079-8159118)
chr5 (411-450)||(34766893-34766932)
chr5 (411-450)||(39508325-39508364)
[»] scaffold0025 (1 HSPs)
scaffold0025 (411-450)||(67913-67952)
[»] chr6 (3 HSPs)
chr6 (411-450)||(444562-444601)
chr6 (411-450)||(2814899-2814938)
chr6 (416-450)||(6200171-6200205)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 7410100 - 7409888
Alignment:
Q  19 aatttgagttatatgtttactaacaatattttcacgactttcaaagtatggattgtattgaaacaaactctcataattagcctttatcattttagattat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7410100 aatttgagttatatgtttactaacaatattttcacgactttcaaagtatggattgtattgaaacaaactctcataattagcctttatcattttagattat 7410001  T
Q  119 ttataattaaataaaatattgtgcaatcaagtaattgagctcaagctagtggttaatgaattttaacaatgacgaattattatctcaatcttaaaaaata 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||    
T  7410000 ttataattaaataaaatattgtgcgatcaagtaattgagctcaagctagtggttaatgaattttaccaatgacgaattattatctcaat-tttaaaaata 7409902  T
Q  219 tttgctaccaaaaa 232  Q
    ||||||||||||||    
T  7409901 tttgctaccaaaaa 7409888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 412 - 450
Target Start/End: Original strand, 794955 - 794993
Alignment:
Q  412 gtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||||||||||||||||||    
T  794955 gtcttcttctcacaatagttatccttttacatgttttag 794993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 18808819 - 18808858
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  18808819 agtcttcttctcacaatagttatccttttatatgttttag 18808858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 1585901 - 1585938
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgtttt 448  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  1585901 agtcttcttcttacaatagttatccttttacatgtttt 1585938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 450
Target Start/End: Complemental strand, 7409866 - 7409832
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||| ||||||||||||||||||||||||||    
T  7409866 tcttctcataatagttatccttttacatgttttag 7409832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 449
Target Start/End: Complemental strand, 26653983 - 26653950
Alignment:
Q  416 tcttctcacaatagttatccttttacatgtttta 449  Q
    |||||||||||| |||||||||||||||||||||    
T  26653983 tcttctcacaatggttatccttttacatgtttta 26653950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 448
Target Start/End: Complemental strand, 24909551 - 24909519
Alignment:
Q  416 tcttctcacaatagttatccttttacatgtttt 448  Q
    |||||||||||||||||||||||||||| ||||    
T  24909551 tcttctcacaatagttatccttttacatatttt 24909519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 21555421 - 21555460
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21555421 agtcttcttctcacaatagttatccttttacatgttttag 21555460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 450
Target Start/End: Original strand, 23249516 - 23249550
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||||||||||||||    
T  23249516 tcttctcacaatagttatccttttacatgttttag 23249550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 450
Target Start/End: Original strand, 27733422 - 27733456
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||||||||||||||    
T  27733422 tcttctcacaatagttatccttttacatgttttag 27733456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 450
Target Start/End: Complemental strand, 36609456 - 36609422
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||||||||||||||    
T  36609456 tcttctcacaatagttatccttttacatgttttag 36609422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 827870 - 827909
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  827870 agtcctcttctcacaatagttatctttttacatgttttag 827909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 12701079 - 12701118
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  12701079 agtcttcttcttacaatagttattcttttacatgttttag 12701118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 56100186 - 56100147
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  56100186 agtcctcttctcgcaatagttatccttttacatgttttag 56100147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 450
Target Start/End: Original strand, 41326084 - 41326121
Alignment:
Q  413 tcttcttctcacaatagttatccttttacatgttttag 450  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41326084 tcttcttctcacaatagttatccttttacatgttttag 41326121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 40337114 - 40337075
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  40337114 agtcatcttctcacaatagttatcattttacatgttttag 40337075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 450
Target Start/End: Complemental strand, 8163686 - 8163652
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    ||||||||||||||||||| |||||||||||||||    
T  8163686 tcttctcacaatagttatctttttacatgttttag 8163652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 13104 - 13065
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  13104 agtcctcttctcacaatagttatccttttacatgttttag 13065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 18551 - 18512
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  18551 agtcatcttctcacaatagttatccttttacatgttttag 18512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 22223 - 22262
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  22223 agtcctcttctcacaatagttatccttttacatgttttag 22262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 4623898 - 4623859
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  4623898 agtcatcttctcacaatagttatccttttacatgttttag 4623859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 23403639 - 23403678
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  23403639 agtcctcttctcacaatagttatccttttacatgttttag 23403678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 30204696 - 30204657
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  30204696 agtcatcttctcacaatagttatccttttacatgttttag 30204657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 36470183 - 36470144
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  36470183 agtcatcttctcacaatagttatccttttacatgttttag 36470144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 450
Target Start/End: Original strand, 16656022 - 16656058
Alignment:
Q  414 cttcttctcacaatagttatccttttacatgttttag 450  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16656022 cttcttctcacaatagttatcattttacatgttttag 16656058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 450
Target Start/End: Complemental strand, 36046567 - 36046538
Alignment:
Q  421 tcacaatagttatccttttacatgttttag 450  Q
    ||||||||||||||||||||||||||||||    
T  36046567 tcacaatagttatccttttacatgttttag 36046538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 36404270 - 36404231
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  36404270 agtcctcttctcacaatagttatccttttacatgttttag 36404231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 450
Target Start/End: Original strand, 47599410 - 47599444
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||||||||||||||    
T  47599410 tcttctcacaatagttatccttttacatgttttag 47599444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 16353537 - 16353498
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  16353537 agtcctcttttcacaatagttatccttttacatgttttag 16353498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 29360523 - 29360562
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  29360523 agtcctcttctcacagtagttatccttttacatgttttag 29360562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 35534523 - 35534562
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  35534523 agtcttcttctcacaatagttatcattttatatgttttag 35534562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 450
Target Start/End: Original strand, 39392002 - 39392037
Alignment:
Q  415 ttcttctcacaatagttatccttttacatgttttag 450  Q
    ||||| ||||||||||||||||||||||||||||||    
T  39392002 ttcttttcacaatagttatccttttacatgttttag 39392037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 45603025 - 45603064
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  45603025 agtcatcttatcacaatagttatccttttacatgttttag 45603064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 46487310 - 46487349
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  46487310 agtcttcttctcacaatagttatcattttatatgttttag 46487349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 30609734 - 30609695
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  30609734 agtcttcttctcacaatagttatcattttacatgttttag 30609695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 30757232 - 30757193
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  30757232 agtcctcttctcacaatagttatccttttacatgttttag 30757193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 450
Target Start/End: Complemental strand, 28107531 - 28107497
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||||||||||||||    
T  28107531 tcttctcacaatagttatccttttacatgttttag 28107497  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 450
Target Start/End: Complemental strand, 37060122 - 37060088
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||||||||||||||    
T  37060122 tcttctcacaatagttatccttttacatgttttag 37060088  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 14786275 - 14786314
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  14786275 agtcctcttctcacaatagttatcctattacatgttttag 14786314  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 21423406 - 21423445
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  21423406 agtcttcatctcacaatagttatcctattacatgttttag 21423445  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 27004490 - 27004529
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  27004490 agtcctcttctcacaatagttatccttttatatgttttag 27004529  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 450
Target Start/End: Original strand, 4382253 - 4382287
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    ||||||||||||||||||| |||||||||||||||    
T  4382253 tcttctcacaatagttatcattttacatgttttag 4382287  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 450
Target Start/End: Complemental strand, 6974560 - 6974526
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    ||||||||||||||||||| |||||||||||||||    
T  6974560 tcttctcacaatagttatcattttacatgttttag 6974526  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 450
Target Start/End: Complemental strand, 24475978 - 24475941
Alignment:
Q  413 tcttcttctcacaatagttatccttttacatgttttag 450  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  24475978 tcttcttatcacaatagttatctttttacatgttttag 24475941  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 416 - 448
Target Start/End: Complemental strand, 15070433 - 15070401
Alignment:
Q  416 tcttctcacaatagttatccttttacatgtttt 448  Q
    ||||||||||||||||||||||||| |||||||    
T  15070433 tcttctcacaatagttatccttttatatgtttt 15070401  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 27969534 - 27969566
Alignment:
Q  417 cttctcacaatagttatccttttacatgtttta 449  Q
    |||||||||||||||||||||||| ||||||||    
T  27969534 cttctcacaatagttatccttttatatgtttta 27969566  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 450
Target Start/End: Complemental strand, 38451081 - 38451048
Alignment:
Q  417 cttctcacaatagttatccttttacatgttttag 450  Q
    ||||||||||||||||||||||||||||||||||    
T  38451081 cttctcacaatagttatccttttacatgttttag 38451048  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 3729381 - 3729342
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  3729381 agtcctcttctcacaataattatccttttacatgttttag 3729342  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 8159118 - 8159079
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  8159118 agtcctcttctcacaataattatccttttacatgttttag 8159079  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 34766932 - 34766893
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  34766932 agtcctcttctcacaatagttattcttttacatgttttag 34766893  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 39508364 - 39508325
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  39508364 agtctttttctcacaatagttattcttttacatgttttag 39508325  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 67913 - 67952
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  67913 agtcctcttctaacaatagttatccttttacatgttttag 67952  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 444562 - 444601
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  444562 agtcctcttctcacaatagttatcctattacatgttttag 444601  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 2814938 - 2814899
Alignment:
Q  411 agtcttcttctcacaatagttatccttttacatgttttag 450  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  2814938 agtcctcttctcacaatagttatcattttacatgttttag 2814899  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 450
Target Start/End: Complemental strand, 6200205 - 6200171
Alignment:
Q  416 tcttctcacaatagttatccttttacatgttttag 450  Q
    |||||||||||||||||||||||||||| ||||||    
T  6200205 tcttctcacaatagttatccttttacatattttag 6200171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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