View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13356_high_2 (Length: 446)
Name: NF13356_high_2
Description: NF13356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13356_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 34431613 - 34432035
Alignment:
| Q |
17 |
agaaacaagcaatactctgatgaggatgataatgaatcactgacactacggccctccactgaatcacaagtactactccttgtctcatttgataatggag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34431613 |
agaaacaagcaatactctgatgaggatgataatgaatcactgacactacggccctccactgaatcacaagtactactccttgtctcatttgataatggag |
34431712 |
T |
|
| Q |
117 |
tagtggaagaagatgaacatgacaaagatggtgaaaataaagaaaatggtgacatagaatgacatgtaaaaacaggcttaaaaatgaacaaagcatgttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34431713 |
tagtggaagaagatgaacatgacaaagatggtgaaaataaagaaaatggtgacatagaatgacatgtaaaaacaggcttaaaaatgaacaaagcatgttt |
34431812 |
T |
|
| Q |
217 |
taaaccaggactaaataaccaatcatgaacatcccaatatacctcaactctcattttgttgagatgaatcaattcattccctctaaatttccattgcaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34431813 |
taaaccaggactaaataaccaatcatgaacatcccaatatacctcaactctcattttgttgagatgaatcaattcattccctctaaatttccattgcaag |
34431912 |
T |
|
| Q |
317 |
tgcttcacatgaaccaccaaatgcccatcaaatcttatctccatttctggttgaacttgaacaccaccaccaatcatcacagaatctccatctccaacaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34431913 |
tgcttcacatgaaccaccaaatgcccatcaaatcttatctccatttctggttgaacttgaacaccaccaccaatcatcacagaatctccatctccaacaa |
34432012 |
T |
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| Q |
417 |
cattattactactattacttcct |
439 |
Q |
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| T |
34432013 |
cattattaccactattacttcct |
34432035 |
T |
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Back To:
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Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 191 - 373
Target Start/End: Original strand, 43402744 - 43402926
Alignment:
| Q |
191 |
ggcttaaaaatgaacaaagcatgttttaaaccaggactaaataaccaatcatgaacatcccaatatacctcaactctcattttgttgagatgaatcaatt |
290 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||| | ||||||| ||| |
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| T |
43402744 |
ggcttaaaaataaacaaagcatgtttcaaaccaggactaaataaccaatcatgaacatcccaataaacttcaattctcattttactaagatgaactgatt |
43402843 |
T |
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| Q |
291 |
cattccctctaaatttccattgcaagtgcttcacatgaaccaccaaatgcccatcaaatcttatctccatttctggttgaact |
373 |
Q |
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|||| |||||||| ||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||| ||||| |||||| |
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| T |
43402844 |
cattacctctaaacttccattgcaaatgcttcacatgaatcaccaaatgtccatcaattcttatctccatctctggctgaact |
43402926 |
T |
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