View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13356_high_3 (Length: 407)
Name: NF13356_high_3
Description: NF13356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13356_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 34076257 - 34076587
Alignment:
| Q |
1 |
cattctttagagctcttgagaaatttaacattcaaacagaactaaaaagaacagtgtgtactcacgattcgaattcaagtgacaactgacaaaacagatt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34076257 |
cattcttttcagctcttgagaaatttaacattcaaacagaactaaaaagaacagtgtgtactcacgattcgaattcaagtgacaactgacaaaacagatt |
34076356 |
T |
|
| Q |
101 |
tctacatgaactccgaaggcgaactagcatcaggtttcacattccccaaaccaccaccatgatgcaacacctgagttggcaacgtccctaaaccagcacc |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34076357 |
tctacatgaactctgaaggcgaactagcatcaggtttcacattccccaaaccaccaccatgatgcaacacctgagttggcaatgtccctaaaccagcacc |
34076456 |
T |
|
| Q |
201 |
acccaacccatcattccccgaaccaaaaaactgacaaagtattctcgccataacaccaagcacctgcatttgattatgacacgcctcggcatgcatctgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34076457 |
acccaacccatcattccccgaaccaaaaaactgacaaagtattctcgccataacaccaagcacctgcatttgattatgacacgcctcagcatgcatctgc |
34076556 |
T |
|
| Q |
301 |
atcatctgcttctcatgttcaatctgcatag |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
34076557 |
atcatctgcttctcatgttcaatctgcatag |
34076587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University