View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_high_1 (Length: 661)
Name: NF13357_high_1
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 640
Target Start/End: Complemental strand, 10403977 - 10403355
Alignment:
| Q |
18 |
gaaacaacccttctgacacaatctatggtatgttcttatgtaggggtgatgttccctctcaactttgtcaacaatgtatagtaaatgcaacacaaagact |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10403977 |
gaaacaacccttctgacacaatctatggtatgttcttatgtaggggtgatgttccctctcaactttgtcaacaatgtatagtaaatgcaacacaaagact |
10403878 |
T |
|
| Q |
118 |
ttccttagaatgttctttgtcaaaagaaggcgttgtttggtatgatgaatgtatggtttggtattccacaaccttggcaacaacatcaactagtttttac |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10403877 |
ttccttagaatgttctttgtcaaaagaaggtgttgtttggtatgatgaatgtatggtttggtattccacaaccttggcagcaacatcaactagtttttac |
10403778 |
T |
|
| Q |
218 |
ttgttgaatacaaataaagtctcaaacacacaaaatttcatgagtttattgttttctacaatgaacaaaacttcaaatgaagcagcttttggtgacaaaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10403777 |
ttgttgaatacaaataaagtctcaaacacacaaaatttcatgagtttattgttttctacaatgaacaaaacctcaaatgaagcagcttttggtgacaaaa |
10403678 |
T |
|
| Q |
318 |
aatatgcatcaaaagaagtaactatatcaaaatttcaaaccctttattgtttagctcaatgtacaccaaatttattaccacatgattgtagaacttgcct |
417 |
Q |
| |
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|||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| || |
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| T |
10403677 |
aatatgcatctaatgaaataactatatcaaaatttcaaaccctttattgtttagctcaatgcacaccaaatttgtcaccacatgattgtagaacttgtct |
10403578 |
T |
|
| Q |
418 |
aagtggattgatagagaaacttccattgtgttgtgaaggaagagttggagggagagttctgaatccaagttgtaatattaggtatgaattttaccctttt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10403577 |
aagtggattgatagagaaacttccattgtgttgtgaaggaagagttggagggagagttctgaatccaagttgtaatattaggtatgaattttaccctttt |
10403478 |
T |
|
| Q |
518 |
tatctatccaatagcattggttcatcaatagatactacatcacaacaaattctacttccacaaacaaaaacttcagaacaccctttttacctttcacaca |
617 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10403477 |
tatctatccaatagtattggttcatcaatagatactacatcacaacaaattctacttccacaaacaaaaacttcagaacaccctttttacctttcacaca |
10403378 |
T |
|
| Q |
618 |
attgttcaagtaataacaaaacc |
640 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
10403377 |
attgttcaagtaataacaaaacc |
10403355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 20230913 - 20231430
Alignment:
| Q |
18 |
gaaacaacccttctgacacaatctatggtatgttcttatgtaggggtgatgttccctctcaactttgtcaacaatgtatagtaaatgcaacacaaagact |
117 |
Q |
| |
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||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20230913 |
gaaacaatccttcagacacaatctatggcatgttcttatgtagggatgatgttccctctcaactttgtcaacaatgtatactaaatgcaacacaaagact |
20231012 |
T |
|
| Q |
118 |
ttccttagaatgttctttgtcaaaagaaggcgttgtttggtatgatgaatgtatggtttggtattccacaaccttg---------------gcaacaaca |
202 |
Q |
| |
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|||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| |||||||| |||| ||| |
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| T |
20231013 |
ttccttgcaatgttctttgtctaaagaaggtattgtttggtacaatgaatgtatggtttggtattcgacaacctttattttctccacggttgcaaggaca |
20231112 |
T |
|
| Q |
203 |
tcaactagtttttacttgttgaatacaaataaagtctcaaacacacaaaatttcatgagtttattgttttctacaatgaacaaaacttcaaatgaagcag |
302 |
Q |
| |
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|| ||| |||| ||||||||||||| | |||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
20231113 |
acacctacttttaacttgttgaatactgacaaagtcgcaaacccgaaaagtttcatgagtttattgttttctacaatgaacaaaactgcagatgaagcag |
20231212 |
T |
|
| Q |
303 |
cttttggtgacaaaaaatatgcatcaaaagaagtaactatatcaaaatttcaaaccctttattgtttagctcaatgtacaccaaatttattaccacatga |
402 |
Q |
| |
|
|||||||||||||||||| ||||||||| | | |||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | ||||||||| |
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| T |
20231213 |
cttttggtgacaaaaaatttgcatcaaatgcaataactatatcgaaatttcaaaccctttattgtttagttcaatgcacaccaaatttgtcaccacatga |
20231312 |
T |
|
| Q |
403 |
ttgtagaacttgcctaagtggattgatagagaaacttccattgtgttgtgaaggaagagttggagggagagttctgaatccaagttgtaatattaggtat |
502 |
Q |
| |
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||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
20231313 |
atgtagaagttgtctaagtggattgatagaggaacttccagtgtgttgtgaaggaagagttggaggaagagttctaaatccaagttgtaatattaggtat |
20231412 |
T |
|
| Q |
503 |
gaattttaccctttttat |
520 |
Q |
| |
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||||| |||||||||||| |
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| T |
20231413 |
gaattctaccctttttat |
20231430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 22124897 - 22125414
Alignment:
| Q |
18 |
gaaacaacccttctgacacaatctatggtatgttcttatgtaggggtgatgttccctctcaactttgtcaacaatgtatagtaaatgcaacacaaagact |
117 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22124897 |
gaaacaatccttcagacacaatctatggcatgttcttatgtagggatgatgttccctctcaactttgtcaacaatgtatactaaatgcaacacaaagact |
22124996 |
T |
|
| Q |
118 |
ttccttagaatgttctttgtcaaaagaaggcgttgtttggtatgatgaatgtatggtttggtattccacaaccttg---------------gcaacaaca |
202 |
Q |
| |
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|||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| |||||||| |||| ||| |
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| T |
22124997 |
ttccttgcaatgttctttgtctaaagaaggtattgtttggtacaatgaatgtatggtttggtattcgacaacctttattttctccacggttgcaaggaca |
22125096 |
T |
|
| Q |
203 |
tcaactagtttttacttgttgaatacaaataaagtctcaaacacacaaaatttcatgagtttattgttttctacaatgaacaaaacttcaaatgaagcag |
302 |
Q |
| |
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|| ||| |||| ||||||||||||| | |||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
22125097 |
acacctacttttaacttgttgaatactgacaaagtcgcaaacccgaaaagtttcatgagtttattgttttctacaatgaacaaaactgcagatgaagcag |
22125196 |
T |
|
| Q |
303 |
cttttggtgacaaaaaatatgcatcaaaagaagtaactatatcaaaatttcaaaccctttattgtttagctcaatgtacaccaaatttattaccacatga |
402 |
Q |
| |
|
|||||||||||||||||| ||||||||| | | |||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| | ||||||||| |
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|
| T |
22125197 |
cttttggtgacaaaaaatttgcatcaaatgcaataactatatcgaaatttcaaaccctttattgtttagttcaatgcacaccaaatttgtcaccacatga |
22125296 |
T |
|
| Q |
403 |
ttgtagaacttgcctaagtggattgatagagaaacttccattgtgttgtgaaggaagagttggagggagagttctgaatccaagttgtaatattaggtat |
502 |
Q |
| |
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||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
22125297 |
atgtagaagttgtctaagtggattgatagaggaacttccagtgtgttgtgaaggaagagttggaggaagagttctaaatccaagttgtaatattaggtat |
22125396 |
T |
|
| Q |
503 |
gaattttaccctttttat |
520 |
Q |
| |
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||||| |||||||||||| |
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|
| T |
22125397 |
gaattctaccctttttat |
22125414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 630
Target Start/End: Original strand, 20231514 - 20231555
Alignment:
| Q |
589 |
ttcagaacaccctttttacctttcacacaattgttcaagtaa |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20231514 |
ttcagaacaccctttttacctttcacacaattgttctagtaa |
20231555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 589 - 630
Target Start/End: Original strand, 22125498 - 22125539
Alignment:
| Q |
589 |
ttcagaacaccctttttacctttcacacaattgttcaagtaa |
630 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22125498 |
ttcagaacaccctttttacctttcacacaattgttctagtaa |
22125539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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