View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13357_high_12 (Length: 359)
Name: NF13357_high_12
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 785368 - 785723
Alignment:
| Q |
1 |
ggaatgcaaataatgtcgatataaatggagagtatgatttaccaaaataataattgaaactaggagtggagggcatgactctgtttatattannnnnnnc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
785368 |
ggaatgcaaataatgtcgatataaatggagagtatgatttaccaaaataataattgaaactaggagtggagggcatgactctgtttatattatttttttc |
785467 |
T |
|
| Q |
101 |
aagaaatagactatcttttacgcgcagttgttaagattaaatctctcaagttacttaaaacaaattaaatacttcattgaaagataactttctatagtnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
785468 |
aagaaatagactatcttttacgcgcagttgttaagatt-aatctctcaagttacttaaaacaaattaaatacttcattgaaagataactttctatagtaa |
785566 |
T |
|
| Q |
201 |
nnnnnnnnnnnnnnnttacacaatcgaaagatatcttccgataaatctagggggcctcacaacaacat-----------------attcatatctcactg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
785567 |
aaaagagcaaaaaaattacacaatcgaaagatatcttccgataaatctagggggcctcacaacaacatggatgatttaaagagcaattcatatctcactg |
785666 |
T |
|
| Q |
284 |
ttcactggtggagacctaattgaagtaagagtaaagctttgtaaggactaataatcc |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
785667 |
ttcactggtggagacctaattgaagtaagagtaaagctttgtaaggactaataatcc |
785723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University