View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13357_high_13 (Length: 334)

Name: NF13357_high_13
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13357_high_13
NF13357_high_13
[»] chr5 (16 HSPs)
chr5 (25-317)||(8643942-8644234)
chr5 (108-317)||(8677618-8677827)
chr5 (82-317)||(8636654-8636889)
chr5 (101-317)||(8535307-8535523)
chr5 (101-317)||(9074804-9075020)
chr5 (123-314)||(8548178-8548369)
chr5 (96-218)||(1600463-1600585)
chr5 (75-284)||(9003247-9003459)
chr5 (129-317)||(8528780-8528968)
chr5 (102-310)||(8641186-8641380)
chr5 (98-219)||(2905126-2905250)
chr5 (152-276)||(2845149-2845273)
chr5 (152-200)||(2857046-2857094)
chr5 (142-199)||(11354671-11354728)
chr5 (142-199)||(11372665-11372722)
chr5 (152-196)||(2874660-2874704)
[»] chr7 (2 HSPs)
chr7 (152-317)||(35779694-35779859)
chr7 (117-191)||(48362064-48362138)
[»] scaffold0627 (1 HSPs)
scaffold0627 (123-218)||(4488-4583)
[»] chr1 (1 HSPs)
chr1 (129-317)||(5130640-5130829)
[»] chr6 (1 HSPs)
chr6 (123-212)||(16716175-16716264)
[»] chr4 (1 HSPs)
chr4 (129-317)||(9442941-9443129)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 25 - 317
Target Start/End: Original strand, 8643942 - 8644234
Alignment:
Q  25 taggaagctcacatatatatttaggggaaagggtttgtatgatttgtaagggagcatcaaattcaatttgtcaatcaaaataaaatcttagcagctacat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643942 taggaagctcacatatatatttaggggaaagggtttgtatgatttgtaagggagcatcaaattcaatttgtcaatcaaaataaaatcttagcagctacat 8644041  T
Q  125 tctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaatt 224  Q
    ||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644042 tcttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaatt 8644141  T
Q  225 cggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatgg 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8644142 cggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatgg 8644234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 108 - 317
Target Start/End: Original strand, 8677618 - 8677827
Alignment:
Q  108 aatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtgg 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8677618 aatcttagcagctacattcttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtgg 8677717  T
Q  208 aattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8677718 aattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatat 8677817  T
Q  308 aacaatatgg 317  Q
    ||||||||||    
T  8677818 aacaatatgg 8677827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 82 - 317
Target Start/End: Original strand, 8636654 - 8636889
Alignment:
Q  82 caaattcaatttgtcaatcaaaataaaatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttc 181  Q
    ||||||| |||| |||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  8636654 caaattcgatttctcaatcaaaataaaatgttagaatctacattctaaccttgagtggatattcagcacctcgatattgtctcctttcacgacatccttc 8636753  T
Q  182 aatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagt 281  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| || ||||||||||||||||||    
T  8636754 aatgagattagacttggaacatgtggaattatttcaacaaactcggaagaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagt 8636853  T
Q  282 agataagacaattgcaggaatgatataacaatatgg 317  Q
    ||||||||||||||||||||||||||||||||||||    
T  8636854 agataagacaattgcaggaatgatataacaatatgg 8636889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 101 - 317
Target Start/End: Original strand, 8535307 - 8535523
Alignment:
Q  101 aaaataaaatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaa 200  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  8535307 aaaataaaatcttagaagctacattcttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaa 8535406  T
Q  201 catgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcagga 300  Q
      ||||| |||| ||||| ||| |  |||  | | |||| |||||||||||||| |||  ||| |||||| |||||||||||||||| ||||||||||||    
T  8535407 tgtgtgggattacttcaaaaaaatttgaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcagga 8535506  T
Q  301 atgatataacaatatgg 317  Q
    |||||||||||||||||    
T  8535507 atgatataacaatatgg 8535523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 101 - 317
Target Start/End: Complemental strand, 9075020 - 9074804
Alignment:
Q  101 aaaataaaatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaa 200  Q
    |||||||| | |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||||    
T  9075020 aaaataaagtattagaagctacattcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaa 9074921  T
Q  201 catgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcagga 300  Q
     |||||| |||| ||||| ||| |  |||  | | || ||||||||||||||||||||  ||| |||||| ||||||||| |||||| ||||||| || |    
T  9074920 tatgtgggattacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagca 9074821  T
Q  301 atgatataacaatatgg 317  Q
    |||||||||||||||||    
T  9074820 atgatataacaatatgg 9074804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 123 - 314
Target Start/End: Complemental strand, 8548369 - 8548178
Alignment:
Q  123 attctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaa 222  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||| |||||| |||||   |    
T  8548369 attcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaatga 8548270  T
Q  223 ttcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaata 314  Q
    ||  ||||||| ||| |||||||||||| ||||||   ||| ||| ||||| | ||||||  ||| |||||   | ||||||||||||||||    
T  8548269 ttgtgaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaata 8548178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 1600585 - 1600463
Alignment:
Q  96 caatcaaaataaaatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagact 195  Q
    |||| |||||||||| || | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||||||||    
T  1600585 caataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagact 1600486  T
Q  196 tggaacatgtggaattatttcaa 218  Q
    ||||| ||| || ||||||||||    
T  1600485 tggaatatgcgggattatttcaa 1600463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 75 - 284
Target Start/End: Original strand, 9003247 - 9003459
Alignment:
Q  75 ggagcatcaaattcaatttgtcaatcaaaataaaatcttagcagctacattctcacct---tgagtggatattcagcacctcaatattgtctcctttcac 171  Q
    ||||||||||||| ||||  | ||| ||||| |||| |||| |||||||| || ||||   ||||| || ||||| |||||||| ||||||||| || ||    
T  9003247 ggagcatcaaatttaattacttaatgaaaatcaaatattagaagctacatccttacctccttgagtagacattcaacacctcaacattgtctccatttac 9003346  T
Q  172 aacatccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcg 271  Q
    | | ||||||||||||||||||||||||| ||||||||||| |||||| ||||  ||   ||  ||||||| | |||||||| ||||  |||||||||||    
T  9003347 agcctccttcaatgagattagacttggaatatgtggaattacttcaactaattttgattgagccccgtgaacttgaaaaactctgaatccatgtttctcg 9003446  T
Q  272 ggttcatagtaga 284  Q
    |||||||||||||    
T  9003447 ggttcatagtaga 9003459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 129 - 317
Target Start/End: Original strand, 8528780 - 8528968
Alignment:
Q  129 accttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattcgg 227  Q
    ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| ||||| | ||||       
T  8528780 accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttat 8528879  T
Q  228 aagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatgg 317  Q
      | | | || ||||||||||||||||||||  ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| |||||||||    
T  8528880 ccg-actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatgg 8528968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 310
Target Start/End: Original strand, 8641186 - 8641380
Alignment:
Q  102 aaataaaatcttagcagctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaac 201  Q
    ||||||||| |||| ||| |||||||  ||||||||| ||||| | ||| ||||||||    |||||||| ||||||||||||||||||||||||||||     
T  8641186 aaataaaat-ttagaagcaacattcttgccttgagtgaatatttaacacttcaatatt----cctttcacgacatccttcaatgagattagacttggaat 8641280  T
Q  202 atgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaa 301  Q
    ||||||||||| ||||||   ||| ||| |||| || ||||||   ||||||||| |        || |||||||||||||||||| |||||||||||||    
T  8641281 atgtggaattacttcaactctttctgaacaagtcccatgaattttgaaaactttgca--------tcccgggttcatagtagataa-acaattgcaggaa 8641371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 2905250 - 2905126
Alignment:
Q  98 atcaaaataaaatcttagcagctacattctcaccttgagtggatattcagcacctc---aatattgtctcctttcacaacatccttcaatgagattagac 194  Q
    ||||||||||||| |||  |||||||||   ||||||||| ||| |||||||||||   || ||||||||| ||||| ||||| |||||||| |||||||    
T  2905250 atcaaaataaaatattataagctacattactaccttgagtagatgttcagcacctcctcaacattgtctccattcacgacatctttcaatgatattagac 2905151  T
Q  195 ttggaacatgtggaattatttcaac 219  Q
    |||||| |||| |||| | ||||||    
T  2905150 ttggaatatgttgaataacttcaac 2905126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 2845273 - 2845149
Alignment:
Q  152 tcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaa 251  Q
    |||| ||||||||||||||| ||||| |||||||| ||||||||||||| || |  ||||| ||||||   | |  |||  || || |||||||||||||    
T  2845273 tcaacattgtctcctttcacgacatcgttcaatgatattagacttggaatatattcaattacttcaacttctcctaaagttgtcccttgaattcgaaaaa 2845174  T
Q  252 ctttgaaagcatgtttctcgggttc 276  Q
    |||||||  |||||||||| |||||    
T  2845173 ctttgaactcatgtttctcaggttc 2845149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 2857094 - 2857046
Alignment:
Q  152 tcaatattgtctcctttcacaacatccttcaatgagattagacttggaa 200  Q
    |||| ||||||||||||||| ||||| |||||||| |||||||||||||    
T  2857094 tcaacattgtctcctttcacgacatcgttcaatgatattagacttggaa 2857046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 11354728 - 11354671
Alignment:
Q  142 attcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttgga 199  Q
    |||| ||||||| || ||| ||||||| |||||||||||||||||||| |||| ||||    
T  11354728 attctgcacctcgatgttgcctcctttaacaacatccttcaatgagatgagacctgga 11354671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 11372665 - 11372722
Alignment:
Q  142 attcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttgga 199  Q
    |||| ||||||| || ||| ||||||| |||||||||||||||||||| |||| ||||    
T  11372665 attctgcacctcgatgttgcctcctttaacaacatccttcaatgagatgagacctgga 11372722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 2874704 - 2874660
Alignment:
Q  152 tcaatattgtctcctttcacaacatccttcaatgagattagactt 196  Q
    |||| ||||||||||||||| ||||| |||||||| |||||||||    
T  2874704 tcaacattgtctcctttcacgacatcgttcaatgatattagactt 2874660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 35779694 - 35779859
Alignment:
Q  152 tcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaattcggaagaagtgccgtgaattcgaaaaa 251  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||| |||  |||  ||| ||  ||||||||||||    
T  35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa 35779793  T
Q  252 ctttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatgg 317  Q
    ||||| |  ||| |||||| |||||| ||||||||| ||||||||| |||||||||||||||||||    
T  35779794 ctttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatgg 35779859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 48362138 - 48362064
Alignment:
Q  117 agctacattctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagatta 191  Q
    ||||||||||| |||||||||||| ||||| |||||| ||||| ||||||||||  |||||||||||||| ||||    
T  48362138 agctacattcttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaatta 48362064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 4488 - 4583
Alignment:
Q  123 attctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaa 218  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| |||||    
T  4488 attcttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaa 4583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 317
Target Start/End: Original strand, 5130640 - 5130829
Alignment:
Q  129 accttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaacaaattcgga 228  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||| || ||||||||||| |||||    ||  ||    
T  5130640 accttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatcttttttga 5130739  T
Q  229 agaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagt-agataagacaattgcaggaatgatataacaatatgg 317  Q
    | |||| || |||||||||||||||||| |   || |||||| ||||||| || ||| || ||| |||||||||||||||| ||||||||    
T  5130740 acaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatgg 5130829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 16716175 - 16716264
Alignment:
Q  123 attctcaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaatta 212  Q
    ||||| |||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||| |||||||||||    
T  16716175 attcttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaatta 16716264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 129 - 317
Target Start/End: Original strand, 9442941 - 9443129
Alignment:
Q  129 accttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattcgg 227  Q
    ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||||||||||  ||| | |||| ||||| | ||||       
T  9442941 accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaaataattttt 9443040  T
Q  228 aagaagtgccgtgaattcgaaaaactttgaaagcatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatgg 317  Q
      | | | || ||||||||||||||||||||  ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| |||||||||    
T  9443041 ccg-actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatgg 9443129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University