View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_high_22 (Length: 203)
Name: NF13357_high_22
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 25744400 - 25744216
Alignment:
| Q |
1 |
ttatatggcgcaagggcaatgtaagtgcaaattactctgagaaggactatacagttaagttcaagtaaaagtgtaacatacccgggaaatgctttggaat |
100 |
Q |
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| T |
25744400 |
ttatatggcgcaagggcaatgtaagtgcaaattattctgagaaggactatacagttaagttcaagtaaaagtgtaacatacctgggaaatgctttggaat |
25744301 |
T |
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| Q |
101 |
aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataatatt |
185 |
Q |
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| T |
25744300 |
aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataatatt |
25744216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 25740653 - 25740516
Alignment:
| Q |
48 |
tatacagttaagttcaagtaaaagtgtaacatacccgggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatct |
147 |
Q |
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| T |
25740653 |
tatactgttaagtttaagtaaaagtgtaacataccagggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatct |
25740554 |
T |
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| Q |
148 |
ctcctctgcgtagtcatgcaaataagtagaataatatt |
185 |
Q |
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| T |
25740553 |
ctcctctgcgtagtcatgcaaataagtagaataatatt |
25740516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 17383504 - 17383421
Alignment:
| Q |
101 |
aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataatat |
184 |
Q |
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| T |
17383504 |
aaaaagccttaaaacaacagcaactaaagcaattcattttccaatctctcctctgcatagtcataaaaataagtataataatat |
17383421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 8535089 - 8535006
Alignment:
| Q |
101 |
aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataatat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
8535089 |
aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcatagtcatgaaaataagtagaataatat |
8535006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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