View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_high_3 (Length: 537)
Name: NF13357_high_3
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 13 - 519
Target Start/End: Complemental strand, 38486205 - 38485699
Alignment:
| Q |
13 |
tcatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486205 |
tcatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatct |
38486106 |
T |
|
| Q |
113 |
gacaagcaatcacatatgtgaatttcattaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaaatgatgacttttg |
212 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486105 |
gacaagcgatcacatatgtgaatttcattaatgcagttccatagtcatggcctttgaacaaacttactgtactgcttgcttcagaaaatgatgacttttg |
38486006 |
T |
|
| Q |
213 |
cgagttgataccgtctggaatatcttgattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagc |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486005 |
cgagttgataccgtctggaatatcttgattcgttggaacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagc |
38485906 |
T |
|
| Q |
313 |
ttgagggccttatagtagtacatcattcctctaacagtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtcc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38485905 |
ttgagggccttatagtagtacatcattcctctaacagtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtcc |
38485806 |
T |
|
| Q |
413 |
atatctcacggtctttcatcatcccctctcgcctcattctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttgatat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38485805 |
atatctcacggtctttcatcatcccctctcgcctcattctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttgatat |
38485706 |
T |
|
| Q |
513 |
cccatct |
519 |
Q |
| |
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||||||| |
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|
| T |
38485705 |
cccatct |
38485699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 249 - 509
Target Start/End: Complemental strand, 30120359 - 30120099
Alignment:
| Q |
249 |
aacaagttcacgtgagccttctgtgatctctacttctgatgcagaatctagaaaagccaaaagcttgagggccttatagtagtacatcattcctctaaca |
348 |
Q |
| |
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|||||| || |||||||||||| || || | ||||||||||||||| ||||| | ||| | |||||||||| |||||| ||||||||||||||||| |
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| T |
30120359 |
aacaagctcgcgtgagccttctcgaatgtccatttctgatgcagaatccagaaatgtcaacatcttgagggcccgatagtaatacatcattcctctaact |
30120260 |
T |
|
| Q |
349 |
gtccgcgatagtgtctggcctctataggatgcccatgacctcaattctcttagtttatctgtccatatctcacggtctttcatcatcccctctcgcctca |
448 |
Q |
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|||||||||||||| ||||||| ||||| ||||| |||||| ||||| |||||||| ||||| | |||| |||||||||||||||||| || | || |
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| T |
30120259 |
gtccgcgatagtgtttggcctcggtaggaagcccacagcctcaaatctctaagtttatcagtccacagatcactgtctttcatcatcccctcccgacgca |
30120160 |
T |
|
| Q |
449 |
ttctctccataaaattcttccattcatcttcatatatagtctgcagatagtatagagttga |
509 |
Q |
| |
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| ||||||| |||||||||||| ||||| ||||| |||||||||| |||||| || ||||| |
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| T |
30120159 |
tcctctccagaaaattcttccactcatcatcataaatagtctgcaaatagtacagggttga |
30120099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 30120610 - 30120432
Alignment:
| Q |
13 |
tcatcaacataggcaactcttagggcttcattgtttttcattaaatacaaaatttcatcggcatgaggatcctttcttgccttttgagttccatatatct |
112 |
Q |
| |
|
||||| ||||| ||||||| || ||||||||||||||||||| |||||||||||| || ||||| |||||||| || |||| ||||||||||| |||| |
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| T |
30120610 |
tcatccacatatgcaactcgaagagcttcattgtttttcattagatacaaaatttcctcagcatggggatccttcttttccttctgagttccataaatct |
30120511 |
T |
|
| Q |
113 |
gacaagcaatcacatatgtgaatttcattaatgcagttccatagtcatggccttt---gaacaaacttactgtactgct |
188 |
Q |
| |
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||||||||| |||||||||||||||||| || ||||| ||||| || |||||||| ||||||||||||| |||||| |
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| T |
30120510 |
gacaagcaaccacatatgtgaatttcatcaaagcagtcccatactcgtggcctttaaataacaaacttactgaactgct |
30120432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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