View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_high_7 (Length: 466)
Name: NF13357_high_7
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 36998503 - 36998286
Alignment:
| Q |
25 |
gtatgtttgttttcctcttaagtcattgtctgtcttaagaggtttaatttatgtttgtttcatttccttttcttttttggtctgagcttgtggatgttcc |
124 |
Q |
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| T |
36998503 |
gtatgtttgttttcctcttaagtcattgtctgtcttaagaggtttaatttatgtttgtttcatttccttttcttttttggtctgagcttgtggatgttcc |
36998404 |
T |
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| Q |
125 |
aatttatttatgtacgtgggacattctgtgacatgctcacatggagttgtaatttcactttgcttgaataaataaaaaattaggagagtttaataattat |
224 |
Q |
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| T |
36998403 |
aatttatttatgtacgtgggacattctgtgacatgctcacatggagttgtaatttcactttgcttgaataaataaaaaattaggagagtttaataattat |
36998304 |
T |
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| Q |
225 |
acataaattatactcgct |
242 |
Q |
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|||||||||||||||||| |
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| T |
36998303 |
acataaattatactcgct |
36998286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 246 - 451
Target Start/End: Complemental strand, 36998251 - 36998050
Alignment:
| Q |
246 |
ttttctatttttaattaaatagaacaatgnnnnnnnnaaggaattaaatagaactaatggtttcgacatagccttcttccaaagaaacattcaaaactga |
345 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
36998251 |
ttttgtatttttaattaaatagaacaatgttttttt-aaggaattaaatagaactaatggtttcgacatagccttcttccaaagaaacgttaaaaactga |
36998153 |
T |
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| Q |
346 |
tgaggtttgccttagcagcttttcacattaagtccttcaaagccttacctgaaaacagccatatattaatgttagattttacaaccttataatgctcaca |
445 |
Q |
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| T |
36998152 |
tgaggtttgccttagcagctttccacattaaatccttcaaagccttacctgaaaacagccatatat---tgttagattttacaaccttattatgctcaca |
36998056 |
T |
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| Q |
446 |
ggttct |
451 |
Q |
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| T |
36998055 |
gtttct |
36998050 |
T |
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