View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_high_9 (Length: 413)
Name: NF13357_high_9
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Original strand, 40078240 - 40078616
Alignment:
| Q |
13 |
aatatcatatgatttataattgtcatgtgcactctgtatctagctgtataataagaatcttgatagccattcttctcctgaaacaagagaaacgcctggg |
112 |
Q |
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| T |
40078240 |
aatatcatatgatttataattgtcatgtgcactatgtatctagctgtataataagaatcttgatagccattcttctcctgaaacaagagaaacgcctggg |
40078339 |
T |
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| Q |
113 |
caaccatgggcaagaggctgggatgatataaagaaatattgttcggggacggaaaggcccccatgctggtttataataagcttgggtatcaatgatattg |
212 |
Q |
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| T |
40078340 |
caaccatgggcaagaggctgggatgatataaagaaatatttttcggggacggaaaggcccccatgctggtttataataagcttgggtatcaatgatattg |
40078439 |
T |
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| Q |
213 |
tctttgtaacaataaattgaatttttgtataccatctttgtcaacttgaaggtttgttttaggctagtaggctagctactagaaatcagtaaaagaataa |
312 |
Q |
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| T |
40078440 |
tctttgtaacaataaattgaatttttgtataccatctttgtcaacttgaaggtttgttttaggctagtaggctagctactagaaatcagtaaaagaataa |
40078539 |
T |
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| Q |
313 |
aacgagtgaaaaagtagaaaattgcgatttcgctttcaatgaacctttgttattatgtattcatctactatgtaccta |
390 |
Q |
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| T |
40078540 |
aacgagtg-aaaagtagaaaattgcgatttcgctttcaatgaacctttgttattatgtattcatctactatgtaccta |
40078616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 65 - 247
Target Start/End: Original strand, 40072978 - 40073149
Alignment:
| Q |
65 |
aagaatcttgatagccattcttctcctgaaacaagagaaacgcctgggcaaccatgggcaagaggctgggatgatataaagaaatattgttcggggacgg |
164 |
Q |
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| T |
40072978 |
aagaatcttgatagccattcttctcctgaaacaagagctacacctgggaaaccatgggtaagaggctgggatgatatacagaaat----ttcgggg---- |
40073069 |
T |
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| Q |
165 |
aaaggcccccatgctggtttataataagcttgggtatcaatgatattgtctttgtaacaataaattgaatttttgtataccat |
247 |
Q |
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| T |
40073070 |
--aggccccagtgctgg-gaatcagtagcttgggtataaatgatactatctttgtaacaataaattgaattcgtgtataccat |
40073149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 40073181 - 40073284
Alignment:
| Q |
254 |
caacttgaaggtttgttttaggctagtaggctagctactagaaatcagtaaaagaataaaacgagtgaaaaagtagaaaattgcgatttcgctttcaatg |
353 |
Q |
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| T |
40073181 |
caacttgaaggtttgttttagactagtag-----ctactagatatcagtaaaagaataaaaggagtg-aaaagtagaagattgcggtttcgctttcagtg |
40073274 |
T |
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| Q |
354 |
aacctttgtt |
363 |
Q |
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| T |
40073275 |
aacctttgtt |
40073284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 44971781 - 44971858
Alignment:
| Q |
71 |
cttgatagccattcttctcctgaaacaagagaaacgcctgggcaaccatgggcaagaggctgggatgatataaagaaa |
148 |
Q |
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| T |
44971781 |
cttgacagccattctgctcctgaaactagagcaacacttggccagccatgggtaagaggttgggatgatattaagaaa |
44971858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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