View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13357_low_10 (Length: 457)

Name: NF13357_low_10
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13357_low_10
NF13357_low_10
[»] scaffold0349 (7 HSPs)
scaffold0349 (180-433)||(3808-4047)
scaffold0349 (282-433)||(8187-8324)
scaffold0349 (354-433)||(14740-14818)
scaffold0349 (1-76)||(14956-15031)
scaffold0349 (1-76)||(4063-4137)
scaffold0349 (5-76)||(8361-8432)
scaffold0349 (180-233)||(14887-14940)
[»] chr6 (33 HSPs)
chr6 (180-433)||(27725231-27725470)
chr6 (110-329)||(26801946-26802161)
chr6 (179-338)||(28785862-28786026)
chr6 (268-436)||(26655627-26655793)
chr6 (268-436)||(26761598-26761764)
chr6 (122-269)||(27531770-27531921)
chr6 (101-231)||(27593558-27593690)
chr6 (101-231)||(27678436-27678568)
chr6 (282-433)||(27718765-27718902)
chr6 (289-427)||(27338450-27338585)
chr6 (289-427)||(27399190-27399325)
chr6 (354-433)||(27698879-27698957)
chr6 (140-231)||(27706980-27707073)
chr6 (264-333)||(27531659-27531725)
chr6 (1-95)||(27678297-27678391)
chr6 (1-76)||(27725486-27725561)
chr6 (382-433)||(27605097-27605148)
chr6 (1-76)||(27699095-27699170)
chr6 (392-433)||(26802198-26802239)
chr6 (265-345)||(27605219-27605300)
chr6 (151-211)||(26655217-26655277)
chr6 (151-211)||(26761188-26761248)
chr6 (1-65)||(27593709-27593773)
chr6 (5-76)||(27718939-27719010)
chr6 (374-433)||(28780881-28780940)
chr6 (323-427)||(27593371-27593470)
chr6 (323-427)||(27678649-27678748)
chr6 (180-233)||(27699026-27699079)
chr6 (323-427)||(27706787-27706886)
chr6 (152-209)||(27338983-27339040)
chr6 (152-209)||(27399723-27399780)
chr6 (393-433)||(27228995-27229035)
chr6 (273-331)||(31283992-31284047)
[»] scaffold0277 (3 HSPs)
scaffold0277 (129-308)||(5153-5340)
scaffold0277 (364-419)||(5076-5131)
scaffold0277 (374-433)||(14018-14077)
[»] scaffold1254 (1 HSPs)
scaffold1254 (288-427)||(302-438)
[»] scaffold0419 (1 HSPs)
scaffold0419 (288-427)||(7191-7327)
[»] chr1 (1 HSPs)
chr1 (118-266)||(28128684-28128833)
[»] chr4 (4 HSPs)
chr4 (289-433)||(18679940-18680080)
chr4 (311-433)||(18731877-18731998)
chr4 (289-369)||(18724499-18724576)
chr4 (268-345)||(18699866-18699940)


Alignment Details
Target: scaffold0349 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 180 - 433
Target Start/End: Complemental strand, 4047 - 3808
Alignment:
Q  180 acactgattagttaagtaacaaagtgaaaaattacatgcaggagaagaataaaagtagttgaaaactaaaacatgttaaaagtcttgtagtacaatgata 279  Q
    ||||||| || |||||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  4047 acactgagtaattaagtaacaaagtgaaaaattacattcagcagaagaataaaagcagttcaaaactaaaacatgttaaaagtcttgtaatacaatgata 3948  T
Q  280 tttattgtatgattggt-ccacacggctattgtaggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgttataaagttactt 378  Q
    ||||||||||||||||| |||||||||||   |||||||| ||||||||||||||||||||||||||||||||            |||||||||||||||    
T  3947 tttattgtatgattggtcccacacggcta---taggaagtggccaggaagtttcagagaccatttttctcata-----------agttataaagttactt 3862  T
Q  379 atcaaagacttcacatcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    |||||||||||||||| |||||||||||||| |||  ||||||||||||||||||    
T  3861 atcaaagacttcacataacagaccacaaaaattta-ccattcatattctgcattc 3808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 282 - 433
Target Start/End: Complemental strand, 8324 - 8187
Alignment:
Q  282 tattgtatgattggtccacacggctattgtaggaagttgccaggaa-gtttcagagaccatttttctcatatgttttctcgttgttataaagttacttat 380  Q
    |||||||||||||||||||||||||||   ||||||| | |||||| |||||||||||||||||||||||            ||||||||||||||||||    
T  8324 tattgtatgattggtccacacggctat---aggaagtggtcaggaaagtttcagagaccatttttctcat------------tgttataaagttacttat 8240  T
Q  381 caaagacttcacatcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    |||||||||||||||||||| |||||||| | | |||||||||||||||||||    
T  8239 caaagacttcacatcacagaacacaaaaattcactcattcatattctgcattc 8187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 14818 - 14740
Alignment:
Q  354 ttttctcgttgttataaagttacttatcaaagacttcacatcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||    
T  14818 ttttctccttgttataaagttacttatcaaagacttcacatcacagaacac-aaaatttactcattcatattctgcattc 14740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15031 - 14956
Alignment:
Q  1 ttaaccatttggtccaagtggtaatattttcaaaagaaatggaaaagagaatattgcatatctatgtgaacctaat 76  Q
    ||||||||||||| |||||||||||||||| |||| |||| ||||  | |||||||||||||||||  ||||||||    
T  15031 ttaaccatttggttcaagtggtaatattttaaaaataaatagaaactataatattgcatatctatgctaacctaat 14956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4137 - 4063
Alignment:
Q  1 ttaaccatttggtccaagtggtaatattttcaaaagaaatggaaaagagaatattgcatatctatgtgaacctaat 76  Q
    ||||||||||||| |||||||||||| |||||||| |||| ||||  | |||||||||||||||||  ||||||||    
T  4137 ttaaccatttggttcaagtggtaata-tttcaaaataaatagaaactataatattgcatatctatgctaacctaat 4063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 8432 - 8361
Alignment:
Q  5 ccatttggtccaagtggtaatattttcaaaagaaatggaaaagagaatattgcatatctatgtgaacctaat 76  Q
    ||||||||| |||||||||||||||| |||| |||| ||||  | |||||||||||||||||  ||||||||    
T  8432 ccatttggttcaagtggtaatattttaaaaataaatagaaactataatattgcatatctatgctaacctaat 8361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 14940 - 14887
Alignment:
Q  180 acactgattagttaagtaacaaagtgaaaaattacatgcaggagaagaataaaa 233  Q
    ||||||| || |||||||||||||||||||||||||| ||| ||| ||||||||    
T  14940 acactgagtaattaagtaacaaagtgaaaaattacattcagcagatgaataaaa 14887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 180 - 433
Target Start/End: Complemental strand, 27725470 - 27725231
Alignment:
Q  180 acactgattagttaagtaacaaagtgaaaaattacatgcaggagaagaataaaagtagttgaaaactaaaacatgttaaaagtcttgtagtacaatgata 279  Q
    ||||||| || |||||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  27725470 acactgagtaattaagtaacaaagtgaaaaattacattcagcagaagaataaaagcagttcaaaactaaaacatgttaaaagtcttgtaatacaatgata 27725371  T
Q  280 tttattgtatgattggt-ccacacggctattgtaggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgttataaagttactt 378  Q
    ||||||||||||||||| |||||||||||   |||||||| ||||||||||||||||||||||||||||||||            |||||||||||||||    
T  27725370 tttattgtatgattggtcccacacggcta---taggaagtggccaggaagtttcagagaccatttttctcata-----------agttataaagttactt 27725285  T
Q  379 atcaaagacttcacatcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    |||||||||||||||| |||||||||||||| |||  ||||||||||||||||||    
T  27725284 atcaaagacttcacataacagaccacaaaaattta-ccattcatattctgcattc 27725231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 110 - 329
Target Start/End: Original strand, 26801946 - 26802161
Alignment:
Q  110 cattactaactgtctttaattagatttttaaatgacatagcttgcatttattttaatttcatgttatttaacac--tgattagttaagtaacaaagtgaa 207  Q
    |||||| |||| ||||||||||||| ||| ||||  | ||||||||||||||||||||||||||  ||||||||  |||||| |||||||||||||||||    
T  26801946 cattaccaactttctttaattagatgtttgaatggaagagcttgcatttattttaatttcatgtagtttaacacactgattaattaagtaacaaagtgaa 26802045  T
Q  208 aaattacatgcaggagaagaataaaagtagttgaaaactaaaacatgttaaaagtcttgtagtacaatgatatttattgtatgattggtccacacggcta 307  Q
    ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||   ||||| | |||||||||||||||||||||||||||||||    
T  26802046 aaattacatgcaacagaagagtaaaagtagttgaaaactaaatcatgttaaaagtctt---gtacacttatatttattgtatgattggtccacacggcta 26802142  T
Q  308 ttgtaggaagttgccaggaagt 329  Q
       |||||||| ||||||||||    
T  26802143 ---taggaagtggccaggaagt 26802161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 179 - 338
Target Start/End: Original strand, 28785862 - 28786026
Alignment:
Q  179 aacactgattagttaagtaacaaagtgaaaaattacatgcaggagaaga----ataaaagtagttgaaaactaaaacatgttaaaagtcttgtagtacaa 274  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||    ||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  28785862 aacactgattaattaagtaacaaagtgaaaaattacatgcagcagaagaatatataaaagcagttcaaaactaaaacatgttaaaagtcatgtagtacaa 28785961  T
Q  275 tgatatttattgt----atgattggtccacacggctattgtaggaagttgccaggaagtttcagagac 338  Q
    ||||||||| | |    ||||||||||||||||||||   |||||||| |||||||||||||||||||    
T  28785962 tgatatttagtatatacatgattggtccacacggcta---taggaagtggccaggaagtttcagagac 28786026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 268 - 436
Target Start/End: Original strand, 26655627 - 26655793
Alignment:
Q  268 agtacaatgatatttattgtatgattgg-tccacacggctattgtaggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgtt 366  Q
    |||||||||||||||| | | ||||||| |||||||||||||   |  |||| ||||  |||||||| ||| ||||||| ||||| |||||||| |||||    
T  26655627 agtacaatgatatttagtatgtgattgggtccacacggctat---aacaagtggccacaaagtttcacagatcatttttttcataagttttctccttgtt 26655723  T
Q  367 ataaagttacttatcaaagacttcacatcacagaccacaaaaacttattcattcatattctgcattccca 436  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  26655724 ataaagttacttaccaaagactttacatcacagaccacaaaaacttactcattcatattctgcattccca 26655793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 268 - 436
Target Start/End: Original strand, 26761598 - 26761764
Alignment:
Q  268 agtacaatgatatttattgtatgattgg-tccacacggctattgtaggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgtt 366  Q
    |||||||||||||||| | | ||||||| |||||||||||||   |  |||| ||||  |||||||| ||| ||||||| ||||| |||||||| |||||    
T  26761598 agtacaatgatatttagtatgtgattgggtccacacggctat---aacaagtggccacaaagtttcacagatcatttttttcataagttttctccttgtt 26761694  T
Q  367 ataaagttacttatcaaagacttcacatcacagaccacaaaaacttattcattcatattctgcattccca 436  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  26761695 ataaagttacttaccaaagactttacatcacagaccacaaaaacttactcattcatattctgcattccca 26761764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 122 - 269
Target Start/End: Complemental strand, 27531921 - 27531770
Alignment:
Q  122 tctttaattagatttttaaatgacatagcttgcatttattttaatttcatgttatttaacactgattagttaagtaacaaagtgaaaaattacatgcagg 221  Q
    ||||| ||||| | ||| ||||| |||| |||||||||||||||  ||||||||||||||| |||||| ||||||||||||||||||| |||||| |||     
T  27531921 tctttgattagttgtttgaatgaaatagtttgcatttattttaagctcatgttatttaacattgattaattaagtaacaaagtgaaaatttacattcagc 27531822  T
Q  222 agaaga----ataaaagtagttgaaaactaaaacatgttaaaagtcttgtag 269  Q
    ||||||    ||||||| |||||||||||||||| ||| |||||||||||||    
T  27531821 agaagaatatataaaagcagttgaaaactaaaacttgtaaaaagtcttgtag 27531770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 27593690 - 27593558
Alignment:
Q  101 tgatatatgcattactaactgtctttaattagatttttaaatgacatagcttgcatttattttaatttcatgttatttaa--cactgattagttaagtaa 198  Q
    |||||| | |||||||||||||||||||||  || ||| |||| ||||||||| |||||||||||  |||||| ||||||  ||||||||| ||||||||    
T  27593690 tgatattttcattactaactgtctttaattgtatgtttgaatggcatagcttgtatttattttaagctcatgtaatttaagacactgattaattaagtaa 27593591  T
Q  199 caaagtgaaaaattacatgcaggagaagaataa 231  Q
    |||||||||||||||||||||| ||||||||||    
T  27593590 caaagtgaaaaattacatgcagcagaagaataa 27593558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 27678436 - 27678568
Alignment:
Q  101 tgatatatgcattactaactgtctttaattagatttttaaatgacatagcttgcatttattttaatttcatgttatttaaca--ctgattagttaagtaa 198  Q
    |||||| |||||||||||||||||||||||  || ||| |||| ||||||||| |||||||||||  |||||| |||||| |  ||||||| ||||||||    
T  27678436 tgatatttgcattactaactgtctttaattgtatgtttgaatggcatagcttgtatttattttaagctcatgtaatttaagatactgattaattaagtaa 27678535  T
Q  199 caaagtgaaaaattacatgcaggagaagaataa 231  Q
    |||||||||||||||||||||| ||||||||||    
T  27678536 caaagtgaaaaattacatgcagcagaagaataa 27678568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 282 - 433
Target Start/End: Complemental strand, 27718902 - 27718765
Alignment:
Q  282 tattgtatgattggtccacacggctattgtaggaagttgccaggaa-gtttcagagaccatttttctcatatgttttctcgttgttataaagttacttat 380  Q
    |||||||||||||||||||||||||||   ||||||| | |||||| |||||||||||||||||||||||            ||||||||||||||||||    
T  27718902 tattgtatgattggtccacacggctat---aggaagtggtcaggaaagtttcagagaccatttttctcat------------tgttataaagttacttat 27718818  T
Q  381 caaagacttcacatcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    |||||||||||||||||||| |||||||| | | |||||||||||||||||||    
T  27718817 caaagacttcacatcacagaacacaaaaattcactcattcatattctgcattc 27718765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 427
Target Start/End: Complemental strand, 27338585 - 27338450
Alignment:
Q  289 tgattggtccacacggctattgtaggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgttataaagttacttatcaaagact 388  Q
    ||||||||||||||||||||   ||||||| |||| ||||||||| | | ||||||| ||| | |||||||| |||||||| || | | ||| |||||||    
T  27338585 tgattggtccacacggctat---aggaagtggccaagaagtttcacaaatcatttttgtcacaagttttctccttgttatatagatccatattaaagact 27338489  T
Q  389 tcacatcacagaccacaaaaacttattcattcatattct 427  Q
     |||||||||||||||||||||||| |||||||||||||    
T  27338488 ccacatcacagaccacaaaaacttactcattcatattct 27338450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 427
Target Start/End: Complemental strand, 27399325 - 27399190
Alignment:
Q  289 tgattggtccacacggctattgtaggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgttataaagttacttatcaaagact 388  Q
    ||||||||||||||||||||   ||||||| |||| ||||||||| | | ||||||| ||| | |||||||| |||||||| || | | ||| |||||||    
T  27399325 tgattggtccacacggctat---aggaagtggccaagaagtttcacaaatcatttttgtcacaagttttctccttgttatatagatccatattaaagact 27399229  T
Q  389 tcacatcacagaccacaaaaacttattcattcatattct 427  Q
     |||||||||||||||||||||||| |||||||||||||    
T  27399228 ccacatcacagaccacaaaaacttactcattcatattct 27399190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 27698957 - 27698879
Alignment:
Q  354 ttttctcgttgttataaagttacttatcaaagacttcacatcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||    
T  27698957 ttttctccttgttataaagttacttatcaaagacttcacatcacagaacac-aaaatttactcattcatattctgcattc 27698879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 27707073 - 27706980
Alignment:
Q  140 aatgacatagcttgcatttattttaatttcatgttatttaacac--tgattagttaagtaacaaagtgaaaaattacatgcaggagaagaataa 231  Q
    |||| ||||||||| |||||||||||  |||||| |||||||||  |||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  27707073 aatggcatagcttgtatttattttaagctcatgtaatttaacacactgattaattaagtaacaaagtgaaaaattaaatgcagcagaagaataa 27706980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 27531725 - 27531659
Alignment:
Q  264 ttgtagtacaatgatatttattgtatgattggtccacacggctattgtaggaagttgccaggaagtttca 333  Q
    ||||||||||||| |||||| |||||||||||||||||||||||   |||||||||||||||||||||||    
T  27531725 ttgtagtacaatgttatttaatgtatgattggtccacacggcta---taggaagttgccaggaagtttca 27531659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27678297 - 27678391
Alignment:
Q  1 ttaaccatttggtccaagtggtaatattttcaaaagaaatggaaaagagaatattgcatatctatgtgaacctaatcttgtagttaactaactaa 95  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||||  |  ||||| ||||||||||  ||||||||||||| |||||||| ||||    
T  27678297 ttaaccatttggttcaagtggtaatattttcaaaataaatagaaactattatatttcatatctatgctaacctaatcttgttgttaactacctaa 27678391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27725561 - 27725486
Alignment:
Q  1 ttaaccatttggtccaagtggtaatattttcaaaagaaatggaaaagagaatattgcatatctatgtgaacctaat 76  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||||  | |||||||||||||||||  ||||||||    
T  27725561 ttaaccatttggttcaagtggtaatattttcaaaataaatagaaactataatattgcatatctatgctaacctaat 27725486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 433
Target Start/End: Complemental strand, 27605148 - 27605097
Alignment:
Q  382 aaagacttcacatcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||||||||    
T  27605148 aaagactccaaatcacagaccacaaaaacttactcattcatattctgcattc 27605097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27699170 - 27699095
Alignment:
Q  1 ttaaccatttggtccaagtggtaatattttcaaaagaaatggaaaagagaatattgcatatctatgtgaacctaat 76  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||||  | |||||| ||||||||||  ||||||||    
T  27699170 ttaaccatttggttcaagtggtaatattttcaaaataaatagaaactataatatttcatatctatgctaacctaat 27699095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 26802198 - 26802239
Alignment:
Q  392 catcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  26802198 catcacagaccacaaaaacttactcattcatattctgcattc 26802239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 27605300 - 27605219
Alignment:
Q  265 tgtagtacaatgatatttattgtatgattggtccacacggctattg-taggaagttgccaggaagtttcagagaccattttt 345  Q
    ||||||||| ||||||||| | | |||||||||||||||||||| | ||||||||  ||||||||||||| | |||||||||    
T  27605300 tgtagtacagtgatatttagtatgtgattggtccacacggctatagataggaagtgaccaggaagtttcacaaaccattttt 27605219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 26655217 - 26655277
Alignment:
Q  151 ttgcatttattttaatttcatgttatttaacactgattagttaagtaacaaagtgaaaaat 211  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||| | || |||||||||||    
T  26655217 ttgcatttatttttatttcatgttatttaccactgattaattaacttactaagtgaaaaat 26655277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 26761188 - 26761248
Alignment:
Q  151 ttgcatttattttaatttcatgttatttaacactgattagttaagtaacaaagtgaaaaat 211  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||| | || |||||||||||    
T  26761188 ttgcatttatttttatttcatgttatttaccactgattaattaacttactaagtgaaaaat 26761248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27593773 - 27593709
Alignment:
Q  1 ttaaccatttggtccaagtggtaatattttcaaaagaaatggaaaagagaatattgcatatctat 65  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||||  | |||||| |||||||||    
T  27593773 ttaaccatttggttcaagtggtaatattttcaaaataaatagaaactataatatttcatatctat 27593709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 27719010 - 27718939
Alignment:
Q  5 ccatttggtccaagtggtaatattttcaaaagaaatggaaaagagaatattgcatatctatgtgaacctaat 76  Q
    ||||||||| |||||||||||||||| |||| |||| ||||  | |||||||||||||||||  ||||||||    
T  27719010 ccatttggttcaagtggtaatattttaaaaataaatagaaactataatattgcatatctatgctaacctaat 27718939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 433
Target Start/End: Original strand, 28780881 - 28780940
Alignment:
Q  374 tacttatcaaagacttcacatcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    |||||||||||||||| | ||||||||||||||||||  | |||||||||||||| ||||    
T  28780881 tacttatcaaagactttaaatcacagaccacaaaaacaaactcattcatattctgaattc 28780940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 427
Target Start/End: Complemental strand, 27593470 - 27593371
Alignment:
Q  323 aggaagtttcagagaccatttttctcatatgttttctcgtt-gttataaagttacttatcaaagacttcacatcacagaccacaaaaacttattcattca 421  Q
    ||||||||||| | ||||||| | |||||  ||||||| |  ||||||||||||||||||||||||||     ||||||||||||||||||  |||||||    
T  27593470 aggaagtttcacataccatttctgtcataacttttctcataagttataaagttacttatcaaagactt-----cacagaccacaaaaactt-ctcattca 27593377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 427
Target Start/End: Original strand, 27678649 - 27678748
Alignment:
Q  323 aggaagtttcagagaccatttttctcatatgttttctcgtt-gttataaagttacttatcaaagacttcacatcacagaccacaaaaacttattcattca 421  Q
    ||||||||||| | ||||||| | |||||  ||||||| |  |||||||||||||||||||||||||     |||||||||||||||||||  |||||||    
T  27678649 aggaagtttcacataccatttctgtcataacttttctcataagttataaagttacttatcaaagact-----tcacagaccacaaaaactt-ctcattca 27678742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 27699079 - 27699026
Alignment:
Q  180 acactgattagttaagtaacaaagtgaaaaattacatgcaggagaagaataaaa 233  Q
    ||||||| || |||||||||||||||||||||||||| ||| ||| ||||||||    
T  27699079 acactgagtaattaagtaacaaagtgaaaaattacattcagcagatgaataaaa 27699026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 427
Target Start/End: Complemental strand, 27706886 - 27706787
Alignment:
Q  323 aggaagtttcagagaccatttttctcatatgttttctcgtt-gttataaagttacttatcaaagacttcacatcacagaccacaaaaacttattcattca 421  Q
    ||||||||||| | ||||||| | |||||  ||||||| |  ||||||||||||||||||||||||||     ||||||||||||||||||  |||||||    
T  27706886 aggaagtttcacataccatttctgtcataacttttctcataagttataaagttacttatcaaagactt-----cacagaccacaaaaactt-ctcattca 27706793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 27339040 - 27338983
Alignment:
Q  152 tgcatttattttaatttcatgttatttaacactgattagttaagtaacaaagtgaaaa 209  Q
    |||||||||||| |||||||||||||||  |||||||| |||| | ||||| ||||||    
T  27339040 tgcatttatttttatttcatgttatttaggactgattaattaacttacaaactgaaaa 27338983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 27399780 - 27399723
Alignment:
Q  152 tgcatttattttaatttcatgttatttaacactgattagttaagtaacaaagtgaaaa 209  Q
    |||||||||||| |||||||||||||||  |||||||| |||| | ||||| ||||||    
T  27399780 tgcatttatttttatttcatgttatttaggactgattaattaacttacaaactgaaaa 27399723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 27228995 - 27229035
Alignment:
Q  393 atcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    |||||| ||||||||||| || |||||||||||||||||||    
T  27228995 atcacataccacaaaaacatactcattcatattctgcattc 27229035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 31283992 - 31284047
Alignment:
Q  273 aatgatatttattgtatgattggtccacacggctattgtaggaagttgccaggaagttt 331  Q
    ||||||||||| ||| |||||||||||||||||||   ||| |||| ||||||||||||    
T  31283992 aatgatatttactgtgtgattggtccacacggcta---tagcaagtggccaggaagttt 31284047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 126; Significance: 8e-65; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 129 - 308
Target Start/End: Complemental strand, 5340 - 5153
Alignment:
Q  129 ttagatttttaaatgacatagcttgcatttattttaatttcatgttatttaacactgattagttaagtaacaaagtgaaaaattacatgcaggagaaga- 227  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||     
T  5340 ttagatgtttaaatgacatagcttgcatttatttttatttcatgttatttaacactgattaattaagtaacaaagtgaaaaattacatgcagcagaagaa 5241  T
Q  228 ---ataaaagtagttgaaaactaaaacatgttaaaagtcttgtagtacaatgatatttattgt----atgattggtccacacggctat 308  Q
       ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||    |||||||||||||||||||||    
T  5240 tttataaaagcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatacatgattggtccacacggctat 5153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 5131 - 5076
Alignment:
Q  364 gttataaagttacttatcaaagacttcacatcacagaccacaaaaacttattcatt 419  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  5131 gttataaagttacctatcaaggactttacatcacagaccacaaaaacttattcatt 5076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 433
Target Start/End: Complemental strand, 14077 - 14018
Alignment:
Q  374 tacttatcaaagacttcacatcacagaccacaaaaacttattcattcatattctgcattc 433  Q
    |||||||||||||||| | ||||||||||||||||||  | |||||||||||||| ||||    
T  14077 tacttatcaaagactttaaatcacagaccacaaaaacaaactcattcatattctgaattc 14018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 427
Target Start/End: Complemental strand, 438 - 302
Alignment:
Q  288 atgattggtccacacggctattgtaggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgttataaagttacttatcaaagac 387  Q
    |||||||||||||||||||||   ||||||| |||| ||||||||| ||||||||||| ||||| || |||||  | ||| | |||| | ||| ||||||    
T  438 atgattggtccacacggctat---aggaagtggccaagaagtttcacagaccatttttgtcataagtgttctcccttttaaatagtttcatattaaagac 342  T
Q  388 ttcacatcacagaccacaaaaacttattcattcatattct 427  Q
    | |||||||||||||||||||||||| |||||||||||||    
T  341 tccacatcacagaccacaaaaacttactcattcatattct 302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 427
Target Start/End: Original strand, 7191 - 7327
Alignment:
Q  288 atgattggtccacacggctattgtaggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgttataaagttacttatcaaagac 387  Q
    |||||||||||||||||||||   ||||||| |||| ||||||||| ||||||||||| ||||| || |||||  | ||| | |||| | ||| ||||||    
T  7191 atgattggtccacacggctat---aggaagtggccaagaagtttcacagaccatttttgtcataagtgttctcccttttaaatagtttcatattaaagac 7287  T
Q  388 ttcacatcacagaccacaaaaacttattcattcatattct 427  Q
    | |||||||||||||||||||||||| |||||||||||||    
T  7288 tccacatcacagaccacaaaaacttactcattcatattct 7327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 266
Target Start/End: Complemental strand, 28128833 - 28128684
Alignment:
Q  118 actgtctttaattagatttttaaatgacatagcttgcatttattttaattt------catgttatttaacactgattagttaagtaacaaagtgaaaaat 211  Q
    ||||||||||||||||| ||| |||  ||||||||||||||||||| ||||      |||||||||||||||||||||    ||||||| | ||||||||    
T  28128833 actgtctttaattagatgttttaatagcatagcttgcatttatttttattttcagttcatgttatttaacactgatta----agtaacaga-tgaaaaat 28128739  T
Q  212 tacatgcaggagaagaataaaagtagttgaaaactaaaacatgttaaaagtcttg 266  Q
    ||||||||| ||||||||||||| ||||| ||| |||||  ||| ||||||||||    
T  28128738 tacatgcagcagaagaataaaagcagttgtaaaataaaatttgtaaaaagtcttg 28128684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 433
Target Start/End: Complemental strand, 18680080 - 18679940
Alignment:
Q  289 tgattggtccacacggctattgtaggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgttataaagttacttatcaaagact 388  Q
    ||||||||||||||||||||   ||||||| | |||||||||| | ||||||||||| ||||| |||||||| |||||||| |||||| ||   ||||||    
T  18680080 tgattggtccacacggctat---aggaagtagtcaggaagtttaacagaccatttttgtcataagttttctccttgttatatagttacatactgaagact 18679984  T
Q  389 -tcacatcacagaccacaaaaacttattcattcatattctgcattc 433  Q
     |||||||||| ||||||||||||||   | |||||||||||||||    
T  18679983 ctcacatcacataccacaaaaactta--aactcatattctgcattc 18679940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 433
Target Start/End: Complemental strand, 18731998 - 18731877
Alignment:
Q  311 taggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgttataaagttacttatcaaagact-tcacatcacagaccacaaaaa 409  Q
    |||||||| | |||||||||| | ||||||||||| ||||| |||||||| |||||||| |||||| ||   |||||| |||||||||| ||||||||||    
T  18731998 taggaagtagtcaggaagtttaacagaccatttttgtcataagttttctccttgttatatagttacatactgaagactctcacatcacataccacaaaaa 18731899  T
Q  410 cttattcattcatattctgcattc 433  Q
    ||||   | |||||||||||||||    
T  18731898 ctta--aactcatattctgcattc 18731877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 18724576 - 18724499
Alignment:
Q  289 tgattggtccacacggctattgtaggaagttgccaggaagtttcagagaccatttttctcatatgttttctcgttgttata 369  Q
    ||||||||||||||||||||   ||||||| | |||||||||| | ||||||||||| ||||| ||||| || ||||||||    
T  18724576 tgattggtccacacggctat---aggaagtggtcaggaagtttaacagaccatttttgtcataagttttgtccttgttata 18724499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 18699940 - 18699866
Alignment:
Q  268 agtacaatgatatttattgtatgattggtccacacggctattgtaggaagttgccaggaagtttcagagaccattttt 345  Q
    |||| |||| |||||| ||| |||||||||||||||||||   |||||||| | |||||||||| | |||||||||||    
T  18699940 agtagaatgttatttaatgtgtgattggtccacacggcta---taggaagtagtcaggaagtttaacagaccattttt 18699866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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