View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_low_12 (Length: 395)
Name: NF13357_low_12
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 288 - 379
Target Start/End: Complemental strand, 13021737 - 13021647
Alignment:
| Q |
288 |
tgcaaaaattacttcatttgactctataatcaaatgcagtaatacaaaatgaatgcaattggaaagtgtcattcaaacttgtatcattaatg |
379 |
Q |
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| T |
13021737 |
tgcaaaaattacttcatttgactctataatcaa-tgcagtaatacaaaatgaatgcaattggaaagtgtcattcaaacttgtatcattaatg |
13021647 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 35556397 - 35556440
Alignment:
| Q |
191 |
catggtaacaaatattctaaaaatattgtttaaggaatctatta |
234 |
Q |
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| T |
35556397 |
catgttaacaaatgttctaaaaatattgtttaaggaatttatta |
35556440 |
T |
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