View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_low_13 (Length: 384)
Name: NF13357_low_13
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 25744238 - 25743944
Alignment:
| Q |
1 |
atgcaaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcatgaa-gataaatcacctgaatacagcgaaaacaaaaga |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |||| |||||||||||| |
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| T |
25744238 |
atgcaaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcgtgaaagttaaatcacctgattacattgaaaacaaaaga |
25744139 |
T |
|
| Q |
100 |
aggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcagagaacatat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744138 |
aggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcagagaacatat |
25744039 |
T |
|
| Q |
200 |
taacataatcagtgaagtcatagaaggactatagatttaattcatttttagtttcttacacaacaaaacatgatgaaactttgacactggttagt |
294 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744038 |
taacataatcagtgaagtcatagaaggactatagttttcattcatttttagtttcttacacaacaaaacatgatgaaactttgacactggttagt |
25743944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 25740538 - 25740326
Alignment:
| Q |
1 |
atgcaaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcatgaa-gataaatcacctgaatacagcgaaaacaaaaga |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |||| |||||||||||| |
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| T |
25740538 |
atgcaaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcgtgaaagttaaatcacctgattacattgaaaacaaaaga |
25740439 |
T |
|
| Q |
100 |
aggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcagagaacatat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |
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| T |
25740438 |
aggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaataactgcagacaacatgt |
25740339 |
T |
|
| Q |
200 |
taacataatcagt |
212 |
Q |
| |
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||||||||||||| |
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| T |
25740338 |
taacataatcagt |
25740326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 17383438 - 17383269
Alignment:
| Q |
5 |
aaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcatgaa-gataaatcacctgaatacagcgaaaacaaaagaaggc |
103 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||| ||||||||| ||||| | |||| || ||||||| ||| ||| |||||| | |||| || |
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| T |
17383438 |
aaataagtataataatatgtgacaaaaatgaaggtacatatttgataatatcaa-gtgtgaaagacaaatcacttgatgacatagaaaactatagaaagc |
17383340 |
T |
|
| Q |
104 |
aagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaac |
174 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
17383339 |
aagctgaagataatgtatggaatgagtagtgatgtaagaatgtttaccttccaatttgtgcgatccaaaac |
17383269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 8535023 - 8534851
Alignment:
| Q |
5 |
aaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcatgaa-gataaatcacctgaatacagcgaaaacaaaagaaggc |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || ||||||||| ||||| | |||| || |||||| |||| ||| |||||| | |||| | |
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| T |
8535023 |
aaataagtagaataatatgagacaaaaatgaaggtgcatatttgataatatcaa-gtgtgaaagacaaatcatctgatgacatagaaaactatagaaatc |
8534925 |
T |
|
| Q |
104 |
aagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaac |
178 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8534924 |
aagctgaagaaaatgtatggaatgagtagtgatgtaagaa-gtttgtcttccagtttgtgcgatccaaaaccaac |
8534851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 36450133 - 36450074
Alignment:
| Q |
119 |
tatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaac |
178 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
36450133 |
tatggaatgagtagtgatgtaagaatgtttgtcttccagtatgtgcgatccaaaaccaac |
36450074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 12510115 - 12510035
Alignment:
| Q |
110 |
aagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcag |
190 |
Q |
| |
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||||||||||| ||||||||||||||||| | |||||| |||||||||||||| |||||||||| ||||||||| |||||| |
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| T |
12510115 |
aagaaaatgtagggaatgagtagtgatgtgaaaatgttggtcttccagtttgtacgatccaaaatcaacaaataactgcag |
12510035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 12514013 - 12513869
Alignment:
| Q |
46 |
ttgataacatcaaagcatgaagata-aatcacctgaatacagcgaaaacaaaagaaggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaat |
144 |
Q |
| |
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||||||||| |||||||||||| ||||||||||| ||| |||||| | ||||||| |||||| ||||||||||||| |||||||||||| | | | |
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| T |
12514013 |
ttgataacactaaagcatgaagagctaatcacctgaagacaccgaaaatccatgaaggcaggctgaaaaaaatgtatggaacgagtagtgatgtgaaagt |
12513914 |
T |
|
| Q |
145 |
gtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgca |
189 |
Q |
| |
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||| |||| ||||||||| ||||||||| ||||| ||| ||||| |
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|
| T |
12513913 |
gttggtctcccagtttgtacgatccaaactcaacagataactgca |
12513869 |
T |
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