View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_low_17 (Length: 271)
Name: NF13357_low_17
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 13273002 - 13273246
Alignment:
| Q |
1 |
aagaaaaagaaaaggaagaagaaggagggcattaatactcaccaaattttttatatttgacaggacaacgagattttgatttttggatgtatgaccaatg |
100 |
Q |
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| T |
13273002 |
aagaagaagaaaaggaagaagaaggagggcattaatactcaccaaa--------atttgacaggaccacgagattttgatttttggatgtatgacctatg |
13273093 |
T |
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| Q |
101 |
aacaagtcatatatataatgtatttcgtatagggcattaatacttactaaccaatattttgatattttacgggaccacaaaattttgattattggatgta |
200 |
Q |
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| T |
13273094 |
aaaaagttttatagataatgtatttcgtagagagcattaatacttactcaccaatattttgatattttacgggatcacaaaattttgatttttggatgta |
13273193 |
T |
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| Q |
201 |
tgacctatgtacaagttatatagataatgtattttgtagagggcattaatact |
253 |
Q |
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| T |
13273194 |
tgacctatgaacaagttatatagataatgtatttcgtagagggcattaatact |
13273246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 36 - 252
Target Start/End: Original strand, 13273247 - 13273464
Alignment:
| Q |
36 |
tactcaccaaattttttatatttgacaggacaacgagattttgatttt-tggatgtatgaccaatgaacaagtcatatatataatgtatttcgtataggg |
134 |
Q |
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| T |
13273247 |
tactcaccaatattttgatattttacgggaccgcaagattttgattttttggatgtatgacctatgaacaagttatatatataatgtattttgtagaggg |
13273346 |
T |
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| Q |
135 |
cattaatacttactaaccaatattttgatattttacgggaccacaaaattttgattattggatgtatgacctatgtacaagttatatagataatgtattt |
234 |
Q |
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| T |
13273347 |
catcaatacttactaaccaatattttgatattttacgggaccacaaaatttatattattggatgtatgacctatgtacaagttatatagacaatgtattt |
13273446 |
T |
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| Q |
235 |
tgtagagggcattaatac |
252 |
Q |
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| T |
13273447 |
aatagagggcattaatac |
13273464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 36 - 253
Target Start/End: Original strand, 13273138 - 13273356
Alignment:
| Q |
36 |
tactcaccaaattttttatatttgacaggacaacgagattttgatttttggatgtatgaccaatgaacaagtcatatatataatgtatttcgtatagggc |
135 |
Q |
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|||||||||| |||| |||||| || ||| || | |||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||| |
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| T |
13273138 |
tactcaccaatattttgatattttacgggatcacaaaattttgatttttggatgtatgacctatgaacaagttatatagataatgtatttcgtagagggc |
13273237 |
T |
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| Q |
136 |
attaatacttactaaccaatattttgatattttacgggaccacaaaattttga-ttattggatgtatgacctatgtacaagttatatagataatgtattt |
234 |
Q |
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| T |
13273238 |
attaatacttactcaccaatattttgatattttacgggaccgcaagattttgattttttggatgtatgacctatgaacaagttatatatataatgtattt |
13273337 |
T |
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| Q |
235 |
tgtagagggcattaatact |
253 |
Q |
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|||||||||||| |||||| |
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| T |
13273338 |
tgtagagggcatcaatact |
13273356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 83 - 239
Target Start/End: Original strand, 13273404 - 13273560
Alignment:
| Q |
83 |
ttggatgtatgaccaatgaacaagtcatatatataatgtatttcgtatagggcattaatacttactaaccaatattttgatattttacgggaccacaaaa |
182 |
Q |
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|||||||||||||| ||| |||||| ||||| | ||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||| | |
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| T |
13273404 |
ttggatgtatgacctatgtacaagttatatagacaatgtatttaatagagggcattaatacatactcaccaatattttgatattttacgggaccacaaga |
13273503 |
T |
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| Q |
183 |
ttttgattattggatgtatgacctatgtacaagttatatagataatgtattttgtag |
239 |
Q |
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|||| ||| |||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
13273504 |
ttttaatttttggatgtatgacctatgaacaagttatatagataatgtatttcgtag |
13273560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 13273465 - 13273559
Alignment:
| Q |
35 |
atactcaccaaattttttatatttgacaggacaacgagattttgatttttggatgtatgaccaatgaacaagtcatatatataatgtatttcgta |
129 |
Q |
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| T |
13273465 |
atactcaccaatattttgatattttacgggaccacaagattttaatttttggatgtatgacctatgaacaagttatatagataatgtatttcgta |
13273559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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