View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_low_21 (Length: 225)
Name: NF13357_low_21
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 21384879 - 21385063
Alignment:
| Q |
18 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagagaatcatggatagtactgcgatcggaagtgtattcgcacgtc |
117 |
Q |
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| T |
21384879 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagaggatcatggatagtactgcgatcggaagtgtattcgcacgtc |
21384978 |
T |
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| Q |
118 |
ctaaccatatgcagaaaacccctcctagggtttggaggatccagagtgtccataatcttcctcgcatgccgaataatcttgctgc |
202 |
Q |
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| T |
21384979 |
ctaaccatatgcagaaaactcctcctagggtttggaggatccagagtgtccataatcttcctcgcataccgaataatcttgctgc |
21385063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 21372678 - 21372494
Alignment:
| Q |
18 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagagaatcatggatagtactgcgatcggaagtgtattcgcacgtc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21372678 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagaggatcatggatagtactgcgatcggaagtgtattcgcacgtc |
21372579 |
T |
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| Q |
118 |
ctaaccatatgcagaaaacccctcctagggtttggaggatccagagtgtccataatcttcctcgcatgccgaataatcttgctgc |
202 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
21372578 |
ctaaccatatgcagaaaactcctcctagggtttggaggatccagagtgtccatattcttcctcgcattccgaataatcttgctgc |
21372494 |
T |
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