View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13357_low_26 (Length: 203)

Name: NF13357_low_26
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13357_low_26
NF13357_low_26
[»] chr4 (1 HSPs)
chr4 (1-160)||(25744376-25744535)
[»] scaffold0515 (1 HSPs)
scaffold0515 (85-125)||(10111-10151)
[»] scaffold0152 (2 HSPs)
scaffold0152 (85-125)||(27731-27771)
scaffold0152 (85-125)||(36507-36547)
[»] scaffold0055 (8 HSPs)
scaffold0055 (85-125)||(17958-17998)
scaffold0055 (85-125)||(20688-20728)
scaffold0055 (85-125)||(23927-23967)
scaffold0055 (85-125)||(37160-37200)
scaffold0055 (85-125)||(45009-45049)
scaffold0055 (85-125)||(57734-57774)
scaffold0055 (88-125)||(29273-29310)
scaffold0055 (85-125)||(76425-76464)
[»] scaffold0052 (8 HSPs)
scaffold0052 (85-125)||(8916-8956)
scaffold0052 (85-125)||(12118-12158)
scaffold0052 (85-125)||(16563-16603)
scaffold0052 (85-125)||(20931-20971)
scaffold0052 (85-125)||(39857-39897)
scaffold0052 (85-125)||(55338-55378)
scaffold0052 (88-125)||(66755-66792)
scaffold0052 (85-125)||(43328-43367)
[»] scaffold0986 (1 HSPs)
scaffold0986 (87-125)||(202-240)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 25744376 - 25744535
Alignment:
Q  1 cttacattgcccttgcgccatataacacccgttggttatgtactaaaaccaagtacaaggaaatatcatcagacgagtgacatagtattgtaagtggcag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  25744376 cttacattgcccttgcgccatataacacccgttggttatgtactaaaaccaagtacaaggaaatattatcagacgagtgacatagtattgtaagtggtag 25744475  T
Q  101 agtgaccttgctgccacgatccactagattcatccactgttgattcaattcattcttcat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744476 agtgaccttgctgccacgatccactagattcatccactgttgattcaattcattcttcat 25744535  T

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Target: scaffold0515 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 10111 - 10151
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  10111 gtattgtaagtggcagagtggccttgctgccacgatccact 10151  T

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Target: scaffold0152 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 27731 - 27771
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  27731 gtattgtaagtggcagagtggccttgctgccacgatccact 27771  T

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Target: scaffold0152; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 36507 - 36547
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  36507 gtattgtaagtggcagagtggccttgctgccacgatccact 36547  T

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Target: scaffold0055 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 17958 - 17998
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  17958 gtattgtaagtggcagagtggccttgctgccacgatccact 17998  T

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Target: scaffold0055; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 20728 - 20688
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  20728 gtattgtaagtggcagagtggccttgctgccacgatccact 20688  T

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Target: scaffold0055; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 23967 - 23927
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  23967 gtattgtaagtggcagagtggccttgctgccacgatccact 23927  T

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Target: scaffold0055; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 37200 - 37160
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  37200 gtattgtaagtggcagagtggccttgctgccacgatccact 37160  T

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Target: scaffold0055; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 45049 - 45009
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  45049 gtattgtaagtggcagagtggccttgctgccacgatccact 45009  T

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Target: scaffold0055; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 57774 - 57734
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  57774 gtattgtaagtggcagagtggccttgctgccacgatccact 57734  T

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Target: scaffold0055; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 29273 - 29310
Alignment:
Q  88 ttgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  29273 ttgtaagtggcagagtggccttgctgccacgatccact 29310  T

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Target: scaffold0055; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 76464 - 76425
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  76464 gtattgtaagtg-cagagtggccttgctgccacgatccact 76425  T

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Target: scaffold0052 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 8956 - 8916
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  8956 gtattgtaagtggcagagtggccttgctgccacgatccact 8916  T

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Target: scaffold0052; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 12158 - 12118
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12158 gtattgtaagtggcagagtggccttgctgccacgatccact 12118  T

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Target: scaffold0052; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 16563 - 16603
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  16563 gtattgtaagtggcagagtggccttgctgccacgatccact 16603  T

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Target: scaffold0052; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 20971 - 20931
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  20971 gtattgtaagtggcagagtggccttgctgccacgatccact 20931  T

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Target: scaffold0052; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 39857 - 39897
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  39857 gtattgtaagtggcagagtggccttgctgccacgatccact 39897  T

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Target: scaffold0052; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 55378 - 55338
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  55378 gtattgtaagtggcagagtggccttgctgccacgatccact 55338  T

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Target: scaffold0052; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 66792 - 66755
Alignment:
Q  88 ttgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  66792 ttgtaagtggcagagtggccttgctgccacgatccact 66755  T

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Target: scaffold0052; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 43367 - 43328
Alignment:
Q  85 gtattgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  43367 gtattgtaagtg-cagagtggccttgctgccacgatccact 43328  T

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Target: scaffold0986 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0986
Description:

Target: scaffold0986; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 202 - 240
Alignment:
Q  87 attgtaagtggcagagtgaccttgctgccacgatccact 125  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  202 attgtaagtggcagagtggccttgctgccacgatccact 240  T

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