View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_low_5 (Length: 500)
Name: NF13357_low_5
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 71 - 489
Target Start/End: Original strand, 48395132 - 48395550
Alignment:
| Q |
71 |
acaatgtaaaactttttacgttgctgcagttaaagtcttttatataattcaacttatcttttcgatctgcgtctctcttcactttaacaggtaccagttg |
170 |
Q |
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| T |
48395132 |
acaatgtaaaactttttacgttgctgcagttaaagtcttttatataattcaacttatcttttcgatctgcgtctctcttcactttaacaggtaccagttg |
48395231 |
T |
|
| Q |
171 |
cgtataataacaaggttcgagaattggagagtcaaggtttagaggaagacatactcaacaagaaattggaacttctcagagttagtatatatgcatgatt |
270 |
Q |
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| T |
48395232 |
cgtataataacaaggttcgagaattggagagtcaaggtttagaggaagacatactcaacaagaaattggaacttctcagagttagtatatatgcatgatt |
48395331 |
T |
|
| Q |
271 |
taaatttttgtgtttgcattattattataggtgagacttgagaggtgctgatttggttaaccttaattgtatataggaatcatacactatcatgtcatcg |
370 |
Q |
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| T |
48395332 |
taaatttttgtgtttgcattattattataggtgagacttgagaggtgatgatttggttaaccttaactgtatataggaatcatacactatcatgtcatcg |
48395431 |
T |
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| Q |
371 |
ccggatgaaagaagaatgtatgactggagcttgtccagagaagataacacagaaacatacatttggccatttgaggtagatgtttcagtacttcaagaag |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48395432 |
ccggatgaaagaagaatgtatgactggagcttgtccagagaagataacacagaaacatacatttggccatttgaggttgatgtttcagtacttcaagaag |
48395531 |
T |
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| Q |
471 |
gagatcctccaccacaggt |
489 |
Q |
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| T |
48395532 |
gagatcctccaccacaggt |
48395550 |
T |
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