View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_low_6 (Length: 485)
Name: NF13357_low_6
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 103 - 468
Target Start/End: Original strand, 4600758 - 4601137
Alignment:
| Q |
103 |
attttaagttgtattgtgaattagatatcagaataaaaatacaaactgtccaatctctatctaacaaccgacatttaccggctgtagtgactgcaacgtt |
202 |
Q |
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| T |
4600758 |
attttaagttgtattgtgaatcagatatcagaataaaaatacaaactgtccgatctctatctaacaaccgacatttaccggctgtagtgactgcaacgtt |
4600857 |
T |
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| Q |
203 |
gaagttgtagtcgatctggattggtaagagagtataccaaactgtacaaatgtatcaagccaagttgatgcaatttcatataaaatcagtctctaagaaa |
302 |
Q |
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| T |
4600858 |
gaagttgtagtcaatctggattggtaagagagtataccaaactgtacaaatgtatcaagccaagttgatgcaatttcatataaaatcagtctctaagaaa |
4600957 |
T |
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| Q |
303 |
cgtagctatattacgacttatgg--------------ccgcaaccgcaattgtggccataatgtaaaacactttgaggtctctgagtctgcattgcaagt |
388 |
Q |
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| T |
4600958 |
agtagctatattacgactcatggttttaaattgaagtccgcaactgcagttgtggccgtaatgtaaaacactttgaggtctctgagtctgcattgcaagt |
4601057 |
T |
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| Q |
389 |
tcgcaaccaaaatttcaattgcatcggccgcattttcccacatttttccgtaatataatggttcatagcatgtaaagatt |
468 |
Q |
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| T |
4601058 |
tcgcaaccaaaatttcaattgcatcggccgcattttcccacatttttccgtaatataatggttcatagcatgtaaagatt |
4601137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4600677 - 4600730
Alignment:
| Q |
1 |
tgagatgaaatgtaaactaatgttttacacaagagaccaattatgctaaaacaa |
54 |
Q |
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| T |
4600677 |
tgagatgaaatgtaaactaatgttttacacaagagaccaattatgctaaaacaa |
4600730 |
T |
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