View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13357_low_7 (Length: 482)
Name: NF13357_low_7
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13357_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 51933491 - 51933961
Alignment:
| Q |
1 |
gttaacttttgatctttccctatcttgtagctcacaaatccatcaaaattgttcttgaatagaccagctaatttcagaagtgtatcttggtaggccttct |
100 |
Q |
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| T |
51933491 |
gttaacttttgatctttccctatcttgtagctcacaaatccatcaaaattgttcttgaatagaccagctaatttcagaagtgtatcttggtaggccttct |
51933590 |
T |
|
| Q |
101 |
tttcaaaccactgcagttcatgcaagtacagttcataccttcaagattgtgatatagttgtataaaacttatatactgaatattaagtattaactaaccg |
200 |
Q |
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| T |
51933591 |
tttcaaaccactgcagttcatgcaagtacagttcataccttcaagattgtgatatagttgtataaaacttatatactgaatattaagtattaactaaccg |
51933690 |
T |
|
| Q |
201 |
tgtctatggggtccaagatttcagatgggactccatctattgctgttgggatctcaagcccaaacacttcagttttaatgtatttcgcattcaagagact |
300 |
Q |
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| T |
51933691 |
tgtttatggggtccaagatttcagatgggactccatctattgctgttgggatctcaagcccaaacacttcagttttaatgtatttcgcattcaagagaca |
51933790 |
T |
|
| Q |
301 |
gccagaatgaatggcatcaatgattttcctcgtgtacgctaacttgatccgattgcctgatccataactgccaaattacagggaagaaaaattagtttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933791 |
gccagaatgaatggcatcaatgattttcctcgtgtacgctaacttgatccgattgcctgatccataactgccaaattacagggaagaaaaattagtttta |
51933890 |
T |
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| Q |
401 |
gtgaggaaaaaactaccatatatgcagttgcattgttagagttcacaccttccccctgaccagccagtatt |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933891 |
gtgaggaaaaaactaccatatatgcagttgcattgttagagttcacaccttccccctgaccagccagtatt |
51933961 |
T |
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