View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13357_low_9 (Length: 459)

Name: NF13357_low_9
Description: NF13357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13357_low_9
NF13357_low_9
[»] chr6 (16 HSPs)
chr6 (6-440)||(264494-264926)
chr6 (319-363)||(26373099-26373143)
chr6 (319-378)||(770343-770402)
chr6 (319-379)||(2732936-2732996)
chr6 (333-381)||(3736990-3737038)
chr6 (318-381)||(24769307-24769370)
chr6 (319-381)||(25010390-25010450)
chr6 (319-381)||(9194433-9194495)
chr6 (319-381)||(11601892-11601954)
chr6 (323-381)||(31322644-31322702)
chr6 (319-380)||(21869862-21869923)
chr6 (319-379)||(1912507-1912567)
chr6 (320-376)||(7180705-7180761)
chr6 (319-347)||(9053922-9053950)
chr6 (319-379)||(9163756-9163816)
chr6 (319-347)||(14399846-14399874)
[»] chr5 (9 HSPs)
chr5 (319-380)||(41894416-41894477)
chr5 (319-379)||(41015004-41015064)
chr5 (319-376)||(37056370-37056427)
chr5 (320-381)||(39258565-39258626)
chr5 (333-381)||(39647142-39647190)
chr5 (320-379)||(2643871-2643930)
chr5 (318-347)||(17755233-17755262)
chr5 (323-380)||(33216226-33216283)
chr5 (353-381)||(4345127-4345155)
[»] chr1 (6 HSPs)
chr1 (319-382)||(6025971-6026034)
chr1 (322-379)||(15956878-15956935)
chr1 (320-380)||(32470260-32470320)
chr1 (322-380)||(52716619-52716677)
chr1 (319-380)||(15955892-15955953)
chr1 (319-380)||(44417796-44417857)
[»] chr4 (9 HSPs)
chr4 (319-381)||(13298527-13298589)
chr4 (319-381)||(50794572-50794634)
chr4 (321-379)||(55314496-55314554)
chr4 (319-380)||(18968274-18968335)
chr4 (312-350)||(33792196-33792234)
chr4 (328-380)||(4449655-4449707)
chr4 (319-347)||(34417365-34417393)
chr4 (319-363)||(34581595-34581639)
chr4 (319-379)||(37579591-37579651)
[»] chr7 (8 HSPs)
chr7 (320-381)||(25314032-25314093)
chr7 (319-380)||(2219526-2219587)
chr7 (323-376)||(22387188-22387241)
chr7 (320-380)||(23747322-23747382)
chr7 (312-379)||(1110402-1110469)
chr7 (319-381)||(7245950-7246012)
chr7 (319-380)||(18715098-18715159)
chr7 (319-380)||(23218621-23218682)
[»] chr2 (6 HSPs)
chr2 (319-371)||(18569427-18569479)
chr2 (319-378)||(41631885-41631944)
chr2 (319-381)||(29378507-29378569)
chr2 (319-381)||(28044715-28044777)
chr2 (323-380)||(12148676-12148733)
chr2 (318-379)||(16733710-16733771)
[»] scaffold0913 (1 HSPs)
scaffold0913 (318-381)||(1278-1341)
[»] scaffold0898 (1 HSPs)
scaffold0898 (318-381)||(4260-4323)
[»] chr8 (6 HSPs)
chr8 (312-379)||(14928223-14928290)
chr8 (319-378)||(32616769-32616828)
chr8 (319-350)||(44806287-44806318)
chr8 (319-381)||(26273040-26273102)
chr8 (319-381)||(33120561-33120623)
chr8 (319-379)||(42843364-42843424)
[»] chr3 (4 HSPs)
chr3 (318-380)||(162902-162964)
chr3 (320-381)||(31386078-31386138)
chr3 (320-380)||(31331068-31331127)
chr3 (319-363)||(54842197-54842241)


Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 440
Target Start/End: Complemental strand, 264926 - 264494
Alignment:
Q  6 agtgagatgaaggtagaggagttttttaagggtttgaatgtgaagaaggaggttgaagttgttgagccattttttagttcgaggaggacgggacttcctc 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  264926 agtgagaagaaggtagaggagttttttaagggtttgaatgtgaagaaggaggttgaagttgttgagccattttttagttcgaggaggacgggacttcctc 264827  T
Q  106 ctgtttgggatagttcgcatgggactgtgcttttgattaacaaacctaaaggtgagtgagttagttgttttgctatttagannnnnnnnnnnnnnngtaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||    
T  264826 ctgtttgggatagttcgcatgggactgtgcttttgattaacaaacctaaaggtgagtgagttagttgttttgctatttagattttttttttttt--gtaa 264729  T
Q  206 aaatggaaatgaattgtgtgcagtcatgcaatcgcactgttgtagagtagttttgttgattgcggattgttcaaattgcgctacactataggggtatatc 305  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  264728 aaatggaaatgaattgtgtgcagtcatgcaatcgcgctgttgtagagtagttttgttgattgcggattgttcaaattgcgctacactataggggtatatc 264629  T
Q  306 gccttaatagtttctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattccctaaaggtgagtgagtgagacatt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  264628 gccttaatagtttctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattccctaaaggtgagtgagtgagacatt 264529  T
Q  406 tcaaccatttagggcttgcttggattgacttatgt 440  Q
    |||||||||||||||||||||||||||||||||||    
T  264528 tcaaccatttagggcttgcttggattgacttatgt 264494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 26373143 - 26373099
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaata 363  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  26373143 ctatttgacaacactttgtactaaatagcgtatcacagaacaata 26373099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 770402 - 770343
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaat 378  Q
    |||||||||||| |||||||||||||||| || ||| |||||||| | ||||||||||||    
T  770402 ctatttgacaaccctttgtactaaatagcgtatcacggaacaataccgatttgttcaaat 770343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 2732996 - 2732936
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    ||||||||||||| ||||||||||||||| || | || ||||||| | |||||||||||||    
T  2732996 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 2732936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 3737038 - 3736990
Alignment:
Q  333 tttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    |||||||| |||||| || | ||||||||||||||||||||||||||||    
T  3737038 tttgtactgaatagcatatcgcagaacaataacaatttgttcaaattcc 3736990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 24769370 - 24769307
Alignment:
Q  318 tctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    |||||||||||| ||||||||||||||||  ||   |||||||||||  |||||||||||||||    
T  24769370 tctatttgacaatactttgtactaaatagtgtattgcagaacaataatgatttgttcaaattcc 24769307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 25010450 - 25010390
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    |||| ||||||||||||||| |||||||| || ||| ||||||||||  ||||||||||||||    
T  25010450 ctatatgacaacactttgtattaaatagcatatcacggaacaataac--tttgttcaaattcc 25010390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 9194433 - 9194495
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||||||||||| ||||||||||||| | ||   |||||||||| |||||||||| ||||||    
T  9194433 ctatttgacaacattttgtactaaataccgtatagcagaacaatagcaatttgttccaattcc 9194495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 11601892 - 11601954
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||||||||||||||| ||||| || |  || | |||||||||||||| |||||||||||||    
T  11601892 ctatttgacaacactttatactacattgtgtatcccagaacaataacaagttgttcaaattcc 11601954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 31322702 - 31322644
Alignment:
Q  323 ttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||||||| ||||||  ||||||  || ||||||| ||||||||||||||||||||||    
T  31322702 ttgacaacattttgtaagaaatagtgtatcacagaataataacaatttgttcaaattcc 31322644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 21869923 - 21869862
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    ||||||||||||| ||||||||||||||  || ||| |||||||||  |||||||| |||||    
T  21869923 ctatttgacaacattttgtactaaatagtgtatcacggaacaataatgatttgttcgaattc 21869862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 1912507 - 1912567
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    ||||||||||| | ||||||||||||||  || | |||||||||| | |||||||||||||    
T  1912507 ctatttgacaataatttgtactaaatagtatatcgcagaacaatagcgatttgttcaaatt 1912567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 7180705 - 7180761
Alignment:
Q  320 tatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaa 376  Q
    ||||| |||| ||||||||||||||||  || |||||||||||| |||||| |||||    
T  7180705 tatttaacaatactttgtactaaatagtgtatcacagaacaatagcaatttattcaa 7180761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 9053922 - 9053950
Alignment:
Q  319 ctatttgacaacactttgtactaaatagc 347  Q
    |||||||||||||||||||||||||||||    
T  9053922 ctatttgacaacactttgtactaaatagc 9053950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 9163816 - 9163756
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    ||||||||||||| ||||||||||||||| ||  || ||||||||   |||||||||||||    
T  9163816 ctatttgacaacattttgtactaaatagcgtataacggaacaatagggatttgttcaaatt 9163756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 14399874 - 14399846
Alignment:
Q  319 ctatttgacaacactttgtactaaatagc 347  Q
    |||||||||||||||||||||||||||||    
T  14399874 ctatttgacaacactttgtactaaatagc 14399846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 41894477 - 41894416
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    |||||||||||||||||||| |||||||| ||   |||||||||||||||||||||||||||    
T  41894477 ctatttgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaattc 41894416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 41015004 - 41015064
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    |||| |||||||||||||||||||||||| || ||| |||||||| || ||||||||||||    
T  41015004 ctatatgacaacactttgtactaaatagcatatcacggaacaatagcagtttgttcaaatt 41015064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 37056427 - 37056370
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaa 376  Q
    ||||||||||||| || |||||||| ||| |||||| |||||||| ||||||||||||    
T  37056427 ctatttgacaacatttcgtactaaacagcgtaccacggaacaatagcaatttgttcaa 37056370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 39258565 - 39258626
Alignment:
Q  320 tatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||||||||  |||||||||||||||  || | |||||||||||||||| |||||||||||    
T  39258565 tatttgacaaacctttgtactaaatagtgtatcgcagaacaataacaattggttcaaattcc 39258626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 39647142 - 39647190
Alignment:
Q  333 tttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||||||||||||| || | |||||||||||| |||||||||||||||    
T  39647142 tttgtactaaatagcatatcgcagaacaataacgatttgttcaaattcc 39647190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 2643930 - 2643871
Alignment:
Q  320 tatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    ||||||||||||||| ||||| |||||| ||   |||||||||||| |||||||||||||    
T  2643930 tatttgacaacacttcgtacttaatagcgtattccagaacaataacgatttgttcaaatt 2643871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 347
Target Start/End: Original strand, 17755233 - 17755262
Alignment:
Q  318 tctatttgacaacactttgtactaaatagc 347  Q
    ||||||||||||||||||||||||||||||    
T  17755233 tctatttgacaacactttgtactaaatagc 17755262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 33216283 - 33216226
Alignment:
Q  323 ttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    |||||||||||||||| |||||||| ||   | ||||||||||||||||||| |||||    
T  33216283 ttgacaacactttgtattaaatagcgtatagcggaacaataacaatttgttccaattc 33216226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 4345155 - 4345127
Alignment:
Q  353 acagaacaataacaatttgttcaaattcc 381  Q
    |||||||||||||||||||||||||||||    
T  4345155 acagaacaataacaatttgttcaaattcc 4345127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 6025971 - 6026034
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattccc 382  Q
    ||||||||||||| ||||||||||||||| || | | |||||||||| ||||||||||||||||    
T  6025971 ctatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaattccc 6026034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 15956935 - 15956878
Alignment:
Q  322 tttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    |||||||||||||||||||||||||| ||   | ||||||||||||||||||||||||    
T  15956935 tttgacaacactttgtactaaatagcgtatggcggaacaataacaatttgttcaaatt 15956878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 380
Target Start/End: Original strand, 32470260 - 32470320
Alignment:
Q  320 tatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    ||||||||||||||| ||||| ||||||  | ||||||| |||||| ||||||||||||||    
T  32470260 tatttgacaacacttcgtactgaatagcgcatcacagaataataactatttgttcaaattc 32470320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 52716677 - 52716619
Alignment:
Q  322 tttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    |||||||||| ||||| ||||||||  ||||||||||||||| |||||| || ||||||    
T  52716677 tttgacaacaatttgtcctaaatagagtaccacagaacaataccaatttctttaaattc 52716619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 15955953 - 15955892
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    ||||||||||||| ||||| ||||||||  || |||| ||||| ||| ||||||||||||||    
T  15955953 ctatttgacaacattttgtcctaaatagtgtatcacataacaagaacgatttgttcaaattc 15955892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 44417857 - 44417796
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    |||||||||||||||||| |||||||| | || | || |||||||||  |||||||||||||    
T  44417857 ctatttgacaacactttgcactaaataacatatcccaaaacaataacggtttgttcaaattc 44417796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 13298589 - 13298527
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    |||||||||| |||||||||||||||||| || ||||||||||||   |||||||||||||||    
T  13298589 ctatttgacagcactttgtactaaatagcatatcacagaacaatagtgatttgttcaaattcc 13298527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 50794634 - 50794572
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    |||||||||||||||||||||||| |||| ||   ||||||||| || |||||||||||||||    
T  50794634 ctatttgacaacactttgtactaactagcatagtgcagaacaatgacgatttgttcaaattcc 50794572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 55314554 - 55314496
Alignment:
Q  321 atttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    |||||| ||||||||||||||| |||| || | |||||||||| |||||||||||||||    
T  55314554 atttgataacactttgtactaattagcatatcgcagaacaatagcaatttgttcaaatt 55314496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 18968335 - 18968274
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    ||||||||||||| ||||||||||||||  || | |||||| ||||||||||| ||||||||    
T  18968335 ctatttgacaacattttgtactaaatagtgtaactcagaactataacaatttgctcaaattc 18968274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 33792234 - 33792196
Alignment:
Q  312 atagtttctatttgacaacactttgtactaaatagccta 350  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  33792234 atagcttctatttaacaacactttgtactaaatagccta 33792196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 4449655 - 4449707
Alignment:
Q  328 aacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    ||||||| ||| ||||||||  | | |||||||||||||||||||||||||||    
T  4449655 aacacttagtattaaatagctaatcgcagaacaataacaatttgttcaaattc 4449707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 34417393 - 34417365
Alignment:
Q  319 ctatttgacaacactttgtactaaatagc 347  Q
    |||||||||||||||||||||||||||||    
T  34417393 ctatttgacaacactttgtactaaatagc 34417365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 34581639 - 34581595
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaata 363  Q
    ||||||||||||| ||||||||||||||| || ||| ||||||||    
T  34581639 ctatttgacaacattttgtactaaatagcgtatcacggaacaata 34581595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 37579591 - 37579651
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    |||||||||||||||| |||||||||||| || | | |||||||||| |||| || |||||    
T  37579591 ctatttgacaacacttagtactaaatagcatatcgcggaacaataacgatttattaaaatt 37579651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 25314032 - 25314093
Alignment:
Q  320 tatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||| |||||||||||||| ||||||  || |||||||||||||| |||||||||||||||    
T  25314032 tatttaacaacactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattcc 25314093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 2219526 - 2219587
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    ||||||||||| | ||||||||||||||| || || ||||||||||| || |||||||||||    
T  2219526 ctatttgacaatattttgtactaaatagcatatcagagaacaataacgatatgttcaaattc 2219587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 22387241 - 22387188
Alignment:
Q  323 ttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaa 376  Q
    ||||||||||||||||||||||| | |   ||||||||||||||||||||||||    
T  22387241 ttgacaacactttgtactaaataacattggacagaacaataacaatttgttcaa 22387188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 23747382 - 23747322
Alignment:
Q  320 tatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    |||| ||||||| |||||||||| |||| || |||||||||||| | ||||||||||||||    
T  23747382 tattcgacaacagtttgtactaactagcatatcacagaacaatagctatttgttcaaattc 23747322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 1110402 - 1110469
Alignment:
Q  312 atagtttctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    |||||| |||||||||||||||| | |||||||||| || | |  ||||||| |||||||||||||||    
T  1110402 atagttgctatttgacaacacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaatt 1110469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 7245950 - 7246012
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||||||||||||||||||||||||||| || | || || |||| | ||||||| |||||||    
T  7245950 ctatttgacaacactttgtactaaatagcgtatcgcaaaagaatagcgatttgtttaaattcc 7246012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 380
Target Start/End: Complemental strand, 18715159 - 18715098
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    |||||| || ||||||||||||||||||  ||   |||||||| ||||||||||||||||||    
T  18715159 ctatttaacgacactttgtactaaatagaatatttcagaacaaaaacaatttgttcaaattc 18715098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 23218621 - 23218682
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    ||||||||||||| |||||| |||||||| || || |||||||| || |||||| |||||||    
T  23218621 ctatttgacaacattttgtattaaatagcgtatcatagaacaatgacgatttgtccaaattc 23218682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 18569479 - 18569427
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttg 371  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||| ||||||    
T  18569479 ctatttgacaacactttatactaaatagcatatcacagaacaataataatttg 18569427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 41631885 - 41631944
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaat 378  Q
    ||||| |||||||||| |||||||||||| || |||| ||||||| ||||||||||||||    
T  41631885 ctattcgacaacacttcgtactaaatagcatatcacaaaacaatagcaatttgttcaaat 41631944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 29378569 - 29378507
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||| ||||| ||||||||| ||||||| || | |||||||||| |||||||||||||||||    
T  29378569 ctattagacaatactttgtacaaaatagcgtatcgcagaacaatatcaatttgttcaaattcc 29378507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 28044715 - 28044777
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    |||||||||||||||||||||||||| || || |||| |||||||  | ||| ||||||||||    
T  28044715 ctatttgacaacactttgtactaaatcgcatatcacaaaacaatagtagtttattcaaattcc 28044777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 12148733 - 12148676
Alignment:
Q  323 ttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    |||||||||| |||||| ||||||| |||| | |||| ||||| ||||||||||||||    
T  12148733 ttgacaacacattgtaccaaatagcataccgcggaactataaccatttgttcaaattc 12148676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 16733710 - 16733771
Alignment:
Q  318 tctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    ||||||||| |||||| |||||||||||||  | | |||||||||| |||||| ||||||||    
T  16733710 tctatttgaaaacactgtgtactaaatagcgaatcgcagaacaatagcaatttattcaaatt 16733771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 1278 - 1341
Alignment:
Q  318 tctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    |||||||||||||||||||||||||||||  || ||| |||||||| | | |||||| ||||||    
T  1278 tctatttgacaacactttgtactaaatagtgtatcacggaacaatatcgacttgttcgaattcc 1341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 4323 - 4260
Alignment:
Q  318 tctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    |||||||||||||||||||||||||||||  || ||| |||||||| | | |||||| ||||||    
T  4323 tctatttgacaacactttgtactaaatagtgtatcacggaacaatatcgacttgttcgaattcc 4260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 379
Target Start/End: Original strand, 14928223 - 14928290
Alignment:
Q  312 atagtttctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    |||||||| |||||||||||||||||||| |||||| || ||   ||||||||  |||||||||||||    
T  14928223 atagtttccatttgacaacactttgtacttaatagcgtatcatgtaacaataaagatttgttcaaatt 14928290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 32616769 - 32616828
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaat 378  Q
    ||||||||||| ||||||||||||||||| || | ||||||  || ||||||||||||||    
T  32616769 ctatttgacaatactttgtactaaatagcataacgcagaactgtagcaatttgttcaaat 32616828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 350
Target Start/End: Complemental strand, 44806318 - 44806287
Alignment:
Q  319 ctatttgacaacactttgtactaaatagccta 350  Q
    ||||||||||||||||||||||||||||||||    
T  44806318 ctatttgacaacactttgtactaaatagccta 44806287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 26273040 - 26273102
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||| ||||||||||||||||||| ||| || ||||||||||||   |||| ||||||||||    
T  26273040 ctattggacaacactttgtactaaacagcgtatcacagaacaatagtgatttattcaaattcc 26273102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 33120561 - 33120623
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||||||||||| ||||||||||||||| ||   |||||||| ||| ||||||||| |||||    
T  33120561 ctatttgacaacattttgtactaaatagcatattgcagaacaacaacgatttgttcagattcc 33120623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 42843424 - 42843364
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaatt 379  Q
    ||||||||||||| ||| |||| |||||| || | | |||||||| |||||||||||||||    
T  42843424 ctatttgacaacaatttatacttaatagcttatcccggaacaatagcaatttgttcaaatt 42843364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 162964 - 162902
Alignment:
Q  318 tctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    ||||||| |||| | |||||||||||||||  | | ||||| |||||||||||||||||||||    
T  162964 tctatttcacaatattttgtactaaatagcgcatcgcagaataataacaatttgttcaaattc 162902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 31386078 - 31386138
Alignment:
Q  320 tatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattcc 381  Q
    ||||||||||||||||| ||||||||  ||| |||| |||| |||| |||||||||||||||    
T  31386078 tatttgacaacactttgaactaaata-actatcacaaaacattaactatttgttcaaattcc 31386138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 31331127 - 31331068
Alignment:
Q  320 tatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc 380  Q
    |||||||||| ||||||||||||| ||| || || |||||||||||| ||||| |||||||    
T  31331127 tatttgacaaaactttgtactaaa-agcgtatcaaagaacaataacagtttgtgcaaattc 31331068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 54842197 - 54842241
Alignment:
Q  319 ctatttgacaacactttgtactaaatagcctaccacagaacaata 363  Q
    ||||||||||||| ||| ||||||||||| || ||||||||||||    
T  54842197 ctatttgacaacattttatactaaatagcgtatcacagaacaata 54842241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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