View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13358_high_4 (Length: 438)
Name: NF13358_high_4
Description: NF13358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13358_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Original strand, 2862664 - 2863076
Alignment:
| Q |
15 |
tcatcaaaatcaaggattttctgcattcacgcagtcaataatttctagtaagtttcataaatatttttaaatttaacttggtgagttcgaaaccaagatg |
114 |
Q |
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| T |
2862664 |
tcatcaaaatcagggattttctgcattcacgcagtcaataatttctagtaagtttcataaatatttttaaatttaacttggtgagttcgaaaccaagatg |
2862763 |
T |
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| Q |
115 |
ttgattaaatgcggagaattcttgactgcagagaatctagatccgtgtcaattggagacagtcttgaaaatgatcaacaaaagctatgatcattggaaga |
214 |
Q |
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| T |
2862764 |
ttgattaaatgcggagaattcttgactgcagagaatctagatccgtgtcaattggagacagtcttgaaaatgat-aacaaaagctgtgatcattggaaga |
2862862 |
T |
|
| Q |
215 |
agaaaaatttgtataagtacatatatatcttttccaccttcctcctgtcaaataatcttggctatatttgttttgttgtaatgttcaatttagggtgtac |
314 |
Q |
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| T |
2862863 |
agaaaaatttgtataagtacatatatatcttttccaccttcctcctgtcaaataatcttggctatatttgtattgttgtaatgttcaatttagggtgtaa |
2862962 |
T |
|
| Q |
315 |
aacatatgtgtatatttatttatagataaaagttcatccttttatgtatgagacttttgccaagatgtgctggtgcaatggggaacatggttttgtagga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2862963 |
aacatatgtgtatatttatttatagataaaagttcatccttttatgtatgagacttttgccaagatgtgctggtgcaatggggaacatggttttgtagga |
2863062 |
T |
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| Q |
415 |
ccctcccctcctat |
428 |
Q |
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| T |
2863063 |
ccctcccctcctat |
2863076 |
T |
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