View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13358_high_6 (Length: 302)
Name: NF13358_high_6
Description: NF13358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13358_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 16908467 - 16908738
Alignment:
| Q |
20 |
atatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
16908467 |
atatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgctccaactgccacaccaatcttcaacacatcaaccaacaatc |
16908566 |
T |
|
| Q |
120 |
tctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcaccac |
219 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16908567 |
tctcattgaaaaactgttcagcaaacaatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcacaac |
16908666 |
T |
|
| Q |
220 |
agctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttgcttct |
291 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16908667 |
agctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttgtttct |
16908738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 26 - 286
Target Start/End: Complemental strand, 14870186 - 14869926
Alignment:
| Q |
26 |
tccctcttcaccacatcatccccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcat |
125 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14870186 |
tccctcttaaccacatcatccccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcat |
14870087 |
T |
|
| Q |
126 |
tgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcaccacagctcc |
225 |
Q |
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|
||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
14870086 |
tgaaaaactgttcagcaaacaatggccaagttgccaatgacaaacctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctcc |
14869987 |
T |
|
| Q |
226 |
aactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagcctttg |
286 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
14869986 |
aactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaatagcctttg |
14869926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 5994714 - 5994979
Alignment:
| Q |
20 |
atatcctccctcttcaccacatcatccccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatc |
119 |
Q |
| |
|
||||| ||||| ||||| || ||| |||||||||||||||||| ||||||||||| || || || | |||||||| || ||||||||||| | | | |
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|
| T |
5994714 |
atatcttcccttttcacaacctcactcccaaactcattccaattcctccattctttagctcccacaggaacaccaattttcaacacatcaactacaagtt |
5994813 |
T |
|
| Q |
120 |
tctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcaccac |
219 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| || | |||||| || |||| |||||||| | || ||||||||| ||||||||| |||| | |
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|
| T |
5994814 |
tctcattgaaaaaatgttcagcaaataaaggccatgtcactgttggtaacccaacattcacactttcaacaacagtgttccaaccacaatgactcactaa |
5994913 |
T |
|
| Q |
220 |
agctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagccttt |
285 |
Q |
| |
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|||||| |||| || ||| ||||||| ||||||||||||||| ||||| |||||||||||||| |
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|
| T |
5994914 |
ccctccaattgcatgattctcaagtatcaaaagctgtggtgcccatccccaaatcaaatagccttt |
5994979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 17572351 - 17572461
Alignment:
| Q |
46 |
cccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaat |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | || ||||| | ||||||||||| | ||| ||||||| ||||| ||||||||||| |
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|
| T |
17572351 |
cccaaactcattccaatttctccattctttggccccaacagataccccaattctcaacacatcaacaaccaacttctcattaaaaaaatgttcagcaaac |
17572450 |
T |
|
| Q |
146 |
aatggccaagt |
156 |
Q |
| |
|
|| |||||||| |
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|
| T |
17572451 |
aaaggccaagt |
17572461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 17620367 - 17620329
Alignment:
| Q |
46 |
cccaaactcattccaatttctccattcttttgcaccaac |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |
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|
| T |
17620367 |
cccaaactcattccaatttctccattctttagccccaac |
17620329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 14709948 - 14710056
Alignment:
| Q |
46 |
cccaaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatc-tctcattgaaaaactgttcagcaaa |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| | ||| ||||| | |||||||||| || |||| ||||||| ||||| || |||||||| |
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| T |
14709948 |
cccaaactcattccaatttctccattctttagccccaacagacaccccaattctcaacacatcaa-taataatcttctcattaaaaaattgatcagcaaa |
14710046 |
T |
|
| Q |
145 |
taatggccaa |
154 |
Q |
| |
|
|| |||||| |
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|
| T |
14710047 |
caaaggccaa |
14710056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 12613877 - 12613769
Alignment:
| Q |
48 |
caaactcattccaatttctccattcttttgcaccaactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataa |
147 |
Q |
| |
|
||||||||||||||||| |||||||| | || | || ||| ||||| || ||||| ||||||| |||| |||||| ||||| |||||||||||||| |
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|
| T |
12613877 |
caaactcattccaatttttccattctctaatccctagtgacaccccaatttttaacacttcaaccaccaatttctcatgaaaaaattgttcagcaaataa |
12613778 |
T |
|
| Q |
148 |
tggccaagt |
156 |
Q |
| |
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|||||||| |
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|
| T |
12613777 |
aggccaagt |
12613769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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