View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13358_low_1 (Length: 599)
Name: NF13358_low_1
Description: NF13358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13358_low_1 |
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| [»] scaffold0128 (5 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 84 - 508
Target Start/End: Original strand, 9790 - 10190
Alignment:
| Q |
84 |
tatcacaaaactagagcgatcactcatacaaggtcatagagtagagtggttgacctcagttgtttaacttgtaattatcagttttgtagtttctataagt |
183 |
Q |
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| T |
9790 |
tatcacaaaactagagcgatcactcatagaaggtcatagagtagagtggttgacctcagttgtttaacttgtaattatcagttttgtagtttctataagt |
9889 |
T |
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| Q |
184 |
ctggctaacctcttatgtttggtgtatgactgttttttacgtttttgtgccacaattaataaattgtagtgcaattttgctttgttttgcaggtgttgtc |
283 |
Q |
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| T |
9890 |
ctggctaacctcttatgtatggtgtgtgactgttttttacgttttagtgccgcaattaataaattgtagtgcaattttgctttgttttgcaggtgttgtc |
9989 |
T |
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| Q |
284 |
cgactcttcgtcaagtttgtgttttcattgcaagctgatcagtcttttggttttggttattcgatctgtcttatttgatttaaattgaaggtgtactgtt |
383 |
Q |
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| T |
9990 |
cgactcttcgtcaagtttttgttttcattgcaagctgatcagtcttatggttttggttattcgatctgtcttatttgatttaaattgaaggtg------- |
10082 |
T |
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| Q |
384 |
acgtgacataaggtgtgcgcgattgtattattcttgctacaaatggtccttggagtcatttggttcatatggtgttgtatttaattacaaggaacctgtt |
483 |
Q |
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| T |
10083 |
---------------tgcgcgattgtattattcttgctaaaaatggtccttggagtcatttggttgatatggtgttgta--taattacaaggaacctgtt |
10165 |
T |
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| Q |
484 |
ctttattgggatgttgttttgtatt |
508 |
Q |
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| T |
10166 |
ctttcttgggatgttgttttgtatt |
10190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 212 - 378
Target Start/End: Original strand, 27419 - 27585
Alignment:
| Q |
212 |
actgttttttacgtttttgtgccacaattaataaattgtagtgcaattttgctttgttttgcaggtgttgtccgactcttcgtcaagtttgtgttttcat |
311 |
Q |
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| T |
27419 |
actgttttttacgttttggtgccgcacttaattaattgtagtgcaattttgctttggtttgcaggtgtggtccgactcttcgtcaagtttctgttttcat |
27518 |
T |
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| Q |
312 |
tgcaagctgatcagtcttttggttttggttattcgatctgtcttatttgatttaaattgaaggtgta |
378 |
Q |
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| T |
27519 |
tgcaagctgaccagtcttttggttttgattattcgatctgtctcatttgatttaaatcgaagctgta |
27585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 9703 - 9758
Alignment:
| Q |
14 |
atatgagtaatttgagtgtcctcgttttttgtaggatgatttgagtatgatatgaa |
69 |
Q |
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| T |
9703 |
atatgagtaatttgagtgtccttgttttttgtaggatgatttgagtatgacatgaa |
9758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 533 - 576
Target Start/End: Original strand, 10243 - 10286
Alignment:
| Q |
533 |
tttgttttttgtccaaacttttaagcaaatgatagcgtcagttc |
576 |
Q |
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| T |
10243 |
tttgttttttgtccaaacttttaagcaaatgatagcgtcagttc |
10286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 27591 - 27631
Alignment:
| Q |
402 |
gcgattgtattattcttgctacaaatggtccttggagtcat |
442 |
Q |
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| T |
27591 |
gcgatagtattattcttgctacaaatggtccttggagtcat |
27631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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