View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13358_low_2 (Length: 592)
Name: NF13358_low_2
Description: NF13358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13358_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 68 - 573
Target Start/End: Original strand, 44155376 - 44155869
Alignment:
| Q |
68 |
agtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtttt |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155376 |
agtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtt-- |
44155473 |
T |
|
| Q |
168 |
tctattgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatg |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155474 |
----------ccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatg |
44155563 |
T |
|
| Q |
268 |
cgatcatcagataagtgcagttcatctctatcgagtacattctcacaaatgtgtcactatctaccatcatcagtgttctcactactctcaccatccacat |
367 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| |
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| T |
44155564 |
cgatcatcagataagtgcagtttatctctatcgagtacattctcacaaatgtgtcattagccaccatcatcagtgttctcactactctcaccatccacat |
44155663 |
T |
|
| Q |
368 |
tatcctctaagaactttaaattgtgatcaggggttgactatctccaatatgtcttcatttttgcaataccaatgtccttattttgcatttgataaccagt |
467 |
Q |
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| T |
44155664 |
tatcctctaagaactttaaatagtgatcaggggttgactatctccaatacgtctccattttggcaataccaatgtccttattttgcatttgataaccaga |
44155763 |
T |
|
| Q |
468 |
ctatacagtttatactcaagatttggaatgagacctgaatcaccattttttggcatcttatttgttcaatgatttatcttgacaaattcattgcaacgtg |
567 |
Q |
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| T |
44155764 |
ctatacagtttatactcaagatttggaatgagacctgaatcaccattttttggcatcttatttgttcaatgatttatcttgacaaattcattgcaacgtg |
44155863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 68 - 375
Target Start/End: Complemental strand, 40894448 - 40894153
Alignment:
| Q |
68 |
agtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcaga-gttt |
166 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |
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| T |
40894448 |
agtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggagcagaggttt |
40894351 |
T |
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| Q |
167 |
ttctattgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaa----gttttttgaaaa |
262 |
Q |
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| T |
40894350 |
ttctattgaagcca---------------gtcaagtgcatgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagttggttctctcaaaa |
40894266 |
T |
|
| Q |
263 |
gaatgcgatcatcagataagtgcagttcatctctatcgagtacattctcacaaatgtgtcactatctaccatcatcagtgttctcactactctcaccatc |
362 |
Q |
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||| | |||||| || ||||||||||||||||||| | |||||||| || ||||||||| |||| || || ||||||||||||||||||||||||||| |
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| T |
40894265 |
gaagccaatcatcgcatgagtgcagttcatctctatcaactacattcttaccaatgtgtcattatccactattatcagtgttctcactactctcaccatc |
40894166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 74 - 500
Target Start/End: Original strand, 44214434 - 44214871
Alignment:
| Q |
74 |
tatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagt-ttttctat |
172 |
Q |
| |
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|||||| ||| |||||| |||| || |||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||| | | |
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| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcacta--atttgcaggtgtttggaggaaggagcagaggattttttgt |
44214531 |
T |
|
| Q |
173 |
tgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatc |
272 |
Q |
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| ||||||||||| ||||||| ||| | || ||||||| ||||||||||||||||||||||| | ||| ||| || ||| | | |||||||||||||| |
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| T |
44214532 |
taaagccagtcaaattgtcagatgtaagacgcctgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaatgttctctcaaaagaatgcgatc |
44214631 |
T |
|
| Q |
273 |
atcagataagtgca------gttcatctctatcgagtacattctcacaaatgtgtcact------atctaccatcatcagtgttctcactactctcacca |
360 |
Q |
| |
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||||||| | || | || |||||||||| | ||||||||||| |||| |||| | ||| |||||| || |||||||||| |||||||||| |
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| T |
44214632 |
atcagatgattgtagtccatgtccatctctatcaactacattctcaccaatgcgtcattcatgtgatccaccatcgtcggtgttctcaccactctcacca |
44214731 |
T |
|
| Q |
361 |
tccacattatcctctaagaactttaaattgtgatcaggggttgactatctccaatatgtcttcatttttgcaataccaatgtccttattttgcatttgat |
460 |
Q |
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|| ||||||||||||||||| | || | ||||||||| |||| ||||| |||| ||| || ||||||||||| ||||||| ||||||| ||||| | |
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| T |
44214732 |
tcaacattatcctctaagaaatctagactgtgatcagatattgatagtctcctatatttctccaattttgcaatactaatgtccatattttgaatttgtt |
44214831 |
T |
|
| Q |
461 |
aaccagtctatacagtttatactcaagatttggaatgaga |
500 |
Q |
| |
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||| ||||||||||||| |||||||||||| ||||||| |
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| T |
44214832 |
aactagtctatacagttcgtactcaagattttcaatgaga |
44214871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 525 - 573
Target Start/End: Complemental strand, 44146250 - 44146202
Alignment:
| Q |
525 |
ttatttgttcaatgatttatcttgacaaattcattgcaacgtgccctat |
573 |
Q |
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| T |
44146250 |
ttatttgttcaatgatttatcttgacaaattcattgcaacgtgccctat |
44146202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 534 - 564
Target Start/End: Complemental strand, 40894099 - 40894069
Alignment:
| Q |
534 |
caatgatttatcttgacaaattcattgcaac |
564 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40894099 |
caatgatttatcttgacaaattcattgcaac |
40894069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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