View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13358_low_3 (Length: 489)
Name: NF13358_low_3
Description: NF13358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13358_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Complemental strand, 47428875 - 47428418
Alignment:
| Q |
16 |
atataggaaactctaggagggtggcaaatggctttaacaggaaaagcccttgcaggccaaagccaataacaaatagtcaaagcagcacaagaacacaaaa |
115 |
Q |
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| T |
47428875 |
atataggaaactctaggagggtggcaaatggctttaacaggaaaagcccttgcaggccaaagccaataacaaatagtcaaagcagcacaagaacacaaaa |
47428776 |
T |
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| Q |
116 |
tgagcattattaaacaagtatagaagaatgagacatatataatgcatgttatgtaac-agattaaatctaacatatgaacaaaactatatctcttacgcg |
214 |
Q |
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| T |
47428775 |
tgagcattattaaacaagtatagaagaatgagacatatataatgcatgttatgtaacaagattaaatctaacatatgaacaaaactatatctcttacgcg |
47428676 |
T |
|
| Q |
215 |
tatttattattttgatattatagccttagcatttgttactcttcctgtttagttactaagtcctattaaaccagtaagtagaattttggaaggtgagaag |
314 |
Q |
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| T |
47428675 |
tatttattattttgatattatagccttagcatttgttactcttcctgtttagttactaaatcctattaaaccagtaagtagaattttggaaggtgagaag |
47428576 |
T |
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| Q |
315 |
gnnnnnnnntggggaaggcaagcaaatggattagaaaccttcttctagggaaaaaagaagagaacttcaagcagattgatacattctgccccgataataa |
414 |
Q |
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| T |
47428575 |
gaaaaaaaatggggaaggcaagcaaatggattagaaaccttcttctagggaaaaaagaagagaacttcaagcagattgatacattctgccccgataataa |
47428476 |
T |
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| Q |
415 |
gaccgcaaacacggttaatagtagtagcagcagtaatagtaataagatggtagtgaag |
472 |
Q |
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| T |
47428475 |
gaccgcaaacacggttaatagtagtagcagcagtaatagtaataagatggtagtgaag |
47428418 |
T |
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