View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13359_high_10 (Length: 315)
Name: NF13359_high_10
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13359_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 18662444 - 18662733
Alignment:
| Q |
14 |
tataaatagatgcattgaatacatccatattttaaaatggatgattaattgaattcattcaagtcattagcaaagttttcaattttaatatattactaaa |
113 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |
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| T |
18662444 |
tataaatagatggattgaatacatccatattttaatatggatgattaattgaatcca----agtcattagcaaagttttcaattttaatatattattaaa |
18662539 |
T |
|
| Q |
114 |
tgatcattgaccataaatgttgaccgacattaaaacattcaattgttattttcatttattttttagattaaatacaccatccctttttcccaaacaa-tt |
212 |
Q |
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|||||||||||||| | | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| || |
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| T |
18662540 |
tgatcattgaccatca-tattgacccacattaaaacattcaattgttattttcatttattttttagattaaatacactatcctttttttccaaaatggtt |
18662638 |
T |
|
| Q |
213 |
catctccatcacaaaccgttctgtttattatgtcacattaatctacaatccataaccaatccatcgcctcttccaaagattatcaaacctcacct |
307 |
Q |
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| T |
18662639 |
cctctccatcacaaaccgttctatttattctgtcacattaatctacaatccataacctatccatcgcctcttccaaagattaacaaacctcacct |
18662733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 102 - 307
Target Start/End: Original strand, 18668949 - 18669155
Alignment:
| Q |
102 |
tatattactaaatgatcattgaccataaatgttgaccgacattaaaacattcaattgttattttcatttattttttagattaaatacaccatcccttttt |
201 |
Q |
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||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
18668949 |
tatattattaaatgatcattgaccaccaatgttgactgacattaaaacattcaattgttattttcatttattttttagattaaatacactatgccttttt |
18669048 |
T |
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| Q |
202 |
c-ccaaacaattcatctccatcacaaaccgttctgtttattatgtcacattaatctacaatccataaccaatccatcgcctcttccaaagattatcaaac |
300 |
Q |
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||||||| ||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18669049 |
ttccaaacagttcctctccatcacaaaccgttttgtttattctgtcacattaatctacaatccataaccaatccatcgcctcttccaaagattatcaaac |
18669148 |
T |
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| Q |
301 |
ctcacct |
307 |
Q |
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||||||| |
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| T |
18669149 |
ctcacct |
18669155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 18668604 - 18668689
Alignment:
| Q |
14 |
tataaatagatgcattgaatacatccatattttaaaatggatgattaattgaattcattcaagtcattagcaaagttttcaattttaata |
103 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
18668604 |
tataaatagatgaattgaatacatccatattttaaaatggatgattaattga----atccaagtcattagcaaagttttcaattttaata |
18668689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 19856617 - 19856563
Alignment:
| Q |
14 |
tataaatagatgcattgaatacatccatattttaaaatggat-gattaattgaat |
67 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19856617 |
tataaatagatggattgaatacatccatattttaaaatggatggattaattgaat |
19856563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 19857642 - 19857696
Alignment:
| Q |
14 |
tataaatagatgcattgaatacatccatattttaaaatggat-gattaattgaat |
67 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
19857642 |
tataaatagatggattgaatacatacatattttaaaatggatggattaattgaat |
19857696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 19856885 - 19856822
Alignment:
| Q |
113 |
atgatcattgaccataaatgttgaccgacattaaaacattcaa-ttgttattttcatttatttt |
175 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||||||| |||||||||| ||||||||| |
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| T |
19856885 |
atgatcattgaccacccatgttgacccacattaaaacattcaatttgttattttgatttatttt |
19856822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 19857352 - 19857428
Alignment:
| Q |
96 |
ttttaatatattactaaatgatcattgaccataaatgttgaccgacattaaaacattcaa-ttgttattttcattta |
171 |
Q |
| |
|
|||||||| || | || |||||||||||||| |||||| | | |||||||||||||||| || ||||||||||||| |
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| T |
19857352 |
ttttaatacataattatatgatcattgaccaccaatgtttatccacattaaaacattcaattttttattttcattta |
19857428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 41491527 - 41491358
Alignment:
| Q |
14 |
tataaatagatgcattgaatacatccatattttaaaatggatg-attaattgaattcattcaagtcattagcaaagttttcaattttaatatattactaa |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||| ||||||| | | || ||| ||||||||||||| ||||||||||||||||| ||| |
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| T |
41491527 |
tataaatggatgcattgaatacatccatatttttaaatggatggattaattaattgaatccaatccattagcaaagttatcaattttaatatattattaa |
41491428 |
T |
|
| Q |
113 |
atgatcattgaccataaatgttgaccgacattaaaacattcaattgttattttcatttattttttagatt |
182 |
Q |
| |
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||||||| | |||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41491427 |
atgatcactaaccaccaatgttgacccacattaaaacattcatctgttattttcatttattttttagatt |
41491358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 41491841 - 41491780
Alignment:
| Q |
96 |
ttttaatatattactaaatgatcattgaccataaatgttgaccgacattaaaacattcaatt |
157 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||| |||||| |||||||||||||||||| |
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| T |
41491841 |
ttttaatacattattaaatgatcattgaccactaatattgacccacattaaaacattcaatt |
41491780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 37579549 - 37579661
Alignment:
| Q |
192 |
atccctttttcccaaacaattcatctccatcacaaaccgttctgtttattatgtcacattaatctacaatccataaccaatccatcgcctcttccaaaga |
291 |
Q |
| |
|
||||||| || ||||||| ||| ||||||||||||||||||||||||||| | ||||||||| |||||||| ||| || || ||||||||||||| |
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| T |
37579549 |
atcccttgtttccaaacagttcctctccatcacaaaccgttctgtttattccttagcattaatctgcaatccatggccactctattgcctcttccaaagg |
37579648 |
T |
|
| Q |
292 |
ttatcaaacctca |
304 |
Q |
| |
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|| ||||||||| |
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| T |
37579649 |
ttcccaaacctca |
37579661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 16992906 - 16992967
Alignment:
| Q |
96 |
ttttaatatattactaaatgatcattgaccataaatgttgaccgacattaaaacattcaatt |
157 |
Q |
| |
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||||||||||||| ||||||| |||||||| |||||||||| |||||||||||||||||| |
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|
| T |
16992906 |
ttttaatatattattaaatgaccattgacctccaatgttgaccaacattaaaacattcaatt |
16992967 |
T |
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