View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13359_high_11 (Length: 283)
Name: NF13359_high_11
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13359_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 1718383 - 1718653
Alignment:
| Q |
1 |
ttctctgtaacatctaagaaaataagaatggtgcagtggaacttgtttgtggtgtgtagtttacatgctttctagttttatgcttttgtttttcatttca |
100 |
Q |
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| T |
1718383 |
ttctctgtaacatctaagaaaataagaatggtgcagtggaacttgtttgtggtgtgtagtttacatgctttctagttttatgcttttgtttttcatttca |
1718482 |
T |
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| Q |
101 |
cttctgtatgttagttaattgccaagttaatggacaataataatgtttaatgtattctttaatcatgcttgtatttggctaatttatacccttcgaacag |
200 |
Q |
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| T |
1718483 |
cttctgtatgttagttaattgccaagttaatggacaataataatgtttaatgtactctttaatcatgcttgtatttggctaatttatacccttcgaacag |
1718582 |
T |
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| Q |
201 |
atggtatctatgtttcttattttttgctctttgattatgcctatgattgtcttgacttatgacattttctt |
271 |
Q |
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| T |
1718583 |
atggtatctatgtttcttattttttgctctttgattatgcctatgattgtcttgacttatgacattttctt |
1718653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 271
Target Start/End: Original strand, 9066903 - 9067035
Alignment:
| Q |
140 |
ataatgtttaatgtattctttaatcatgcttgtatttggctaatttatacccttcgaacagatgg-tatctatgtttcttattttttgctctttgattat |
238 |
Q |
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| T |
9066903 |
ataatgtttaatgcattctttgatcatgtttgtatttggtttatttattccctttgaacagacagctatttatgtttcttgttttttgctctttgattat |
9067002 |
T |
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| Q |
239 |
gcctatgattgtcttgacttatgacattttctt |
271 |
Q |
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| T |
9067003 |
gcatgtgatagtcttgacttgtgacattttctt |
9067035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 14508475 - 14508414
Alignment:
| Q |
18 |
gaaaataagaatggtgcagtggaacttgtttgtggtgtgtagtttacatgctttctagtttt |
79 |
Q |
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||||| || ||||||||| ||||||||||||| | | ||||||||||||||||||| |||| |
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| T |
14508475 |
gaaaacaacaatggtgcataggaacttgtttgttgagagtagtttacatgctttctattttt |
14508414 |
T |
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