View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13359_low_1 (Length: 834)
Name: NF13359_low_1
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13359_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 792; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 19 - 822
Target Start/End: Original strand, 52034340 - 52035143
Alignment:
| Q |
19 |
cgaccaatagccaacgtttgcttcaagacctacgggtatatgagtatgtctcaagctatttcctttttatctgatttcaagttaggacattacatgaaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034340 |
cgaccaatagccaacgtttgcttcaagacctacgggtatatgagtatgtctcaagctatttcctttttatctgatttcaagttaggacattacatgaaga |
52034439 |
T |
|
| Q |
119 |
tcccaccaaggtcaatgttcatagttcaggtatattgtctcaggctatttcctttcatagttattctaaatggtgaatgctaatgatgctcgtaaaattg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
52034440 |
tcccaccaaggtcaatgttcatagttcaggtatattgtctcaggctatttcctttcatagttattttaaatggtgaatactaatgatgctcgtaaaattg |
52034539 |
T |
|
| Q |
219 |
atgccacagattttaggtactcttatagctggaacagtggatgttggtgtggcatggtggttgctaggttcaataaagaacatatgccatgaagatcaac |
318 |
Q |
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| T |
52034540 |
atgccacagattttaggtactcttatagctggaacagtggatgttggtgtggcatggtggttgctaggttcaataaagaacatatgccatgaagatcaac |
52034639 |
T |
|
| Q |
319 |
ttcccaaaggtagtccatggacatgcccaaatgacaacgtgttctttgatgcctccgttatatggggtttggtgggaccaagaagaatttttgggccact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52034640 |
ttcccaaaggtagtccatggacatgcccaaatgacaacgtgttctttgatgcctccgttatatggggtttggtgggaccaagaagaatttttgggccact |
52034739 |
T |
|
| Q |
419 |
aggaaactacgaaaagctgaactgggccttcctaattggactactgagcccaataatcatatgggccctaataaaagcctttcccagtcaaaaatggata |
518 |
Q |
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| T |
52034740 |
aggaaactacgaaaagctgaactgggccttcctaattggactactgagcccaataatcatatgggccctaataaaagcctttcccagtcaaaaatggata |
52034839 |
T |
|
| Q |
519 |
tcatacattcacattcctgttctgcttggtgcaactgcaagtatgccaccagctagcacagtgaatttcaattcatggattactgttgcagttatattta |
618 |
Q |
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| T |
52034840 |
tcatacattcacattcctgttctgcttggtgcaactgcaagtatgccaccagctagcacagtgaatttcaattcatggattactgttgcagttatattta |
52034939 |
T |
|
| Q |
619 |
actattttatccacaaatatcgtaagaagtggtgggagagatacaattatattcttgctgctgctttagatgctggattggctttcatgactactcttct |
718 |
Q |
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| T |
52034940 |
actattttatccacaaatatcgtaagaagtggtgggagagatacaattatattcttgctgctgctttagatgctggattggctttcatgactactcttct |
52035039 |
T |
|
| Q |
719 |
atactttacggttagtagtggtggtataagtttgaattggtggggacaagatgagcattgtcctcttgctacatgtcctactgctaaaggcataattact |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52035040 |
atactttacggttagtagtggtggtataagtttgaattggtggggacaagatgagcattgtcctcttgctacatgtcctactgctaaaggcatagttact |
52035139 |
T |
|
| Q |
819 |
gatg |
822 |
Q |
| |
|
|||| |
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|
| T |
52035140 |
gatg |
52035143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 36902890 - 36902971
Alignment:
| Q |
262 |
ttggtgtggcatggtggttgctaggttcaataaagaacatatgccatgaagatcaacttcccaaaggtagtccatggacatg |
343 |
Q |
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||||||| |||||||||||||||| ||| | || |||||||| || |||||| ||||||||||| |||||||||||||| |
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| T |
36902890 |
ttggtgtagcatggtggttgctagactcagtcaaaaacatatgtaataaagatcttcttcccaaaggcagtccatggacatg |
36902971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 2171172 - 2171112
Alignment:
| Q |
90 |
tgatttcaagttaggacattacatgaagatcccaccaaggtcaatgttcatagttcaggta |
150 |
Q |
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|||||||||| | ||||| |||||||| ||||| ||||| ||||||||| ||||||||||| |
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| T |
2171172 |
tgatttcaagcttggacactacatgaaaatccctccaagatcaatgttcttagttcaggta |
2171112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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