View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13359_low_10 (Length: 349)

Name: NF13359_low_10
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13359_low_10
NF13359_low_10
[»] chr3 (11 HSPs)
chr3 (10-330)||(2797390-2797710)
chr3 (10-326)||(2855599-2855915)
chr3 (7-188)||(2790491-2790672)
chr3 (10-326)||(2807300-2807616)
chr3 (10-326)||(5412919-5413235)
chr3 (10-315)||(2838389-2838694)
chr3 (10-326)||(2769102-2769418)
chr3 (10-326)||(2749028-2749344)
chr3 (10-315)||(2759258-2759563)
chr3 (119-315)||(2818601-2818797)
chr3 (235-330)||(2790396-2790491)
[»] scaffold0691 (1 HSPs)
scaffold0691 (10-295)||(5941-6226)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 2797710 - 2797390
Alignment:
Q  10 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgatttgtcatcaattttgtgtaacaactgcaaaagagggctttcag 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||    
T  2797710 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcag 2797611  T
Q  110 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacgataatcaaattttgttgttac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||    
T  2797610 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttac 2797511  T
Q  210 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797510 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaac 2797411  T
Q  310 caaccagacaattcttccctc 330  Q
    |||||||||||||||||||||    
T  2797410 caaccagacaattcttccctc 2797390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 2855599 - 2855915
Alignment:
Q  10 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgatttgtcatcaattttgtgtaacaactgcaaaagagggctttcag 109  Q
    ||||||| ||||||| | |||||||||||||||||||| ||||||||||||| ||| | |||||| |||||||| |||| | |   |||||||  |||||    
T  2855599 aagaataccaaatacctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcag 2855698  T
Q  110 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacgataatcaaattttgttgttac 209  Q
    || | | |||||||| |||||||||||| ||||| |  || ||||| |||||||| |||||||||| ||||||||||||| ||||||| |||||||||||    
T  2855699 ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttac 2855798  T
Q  210 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaac 309  Q
    |||||| ||||| |||| ||||||||||||||| |||||||||| | | |||||||| ||||||||||||||| ||||||||| | | || || | ||||    
T  2855799 cttttggctgtcaaaaattagcttggcaagagtagtttttcctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaataac 2855898  T
Q  310 caaccagacaattcttc 326  Q
    |||||||||||||||||    
T  2855899 caaccagacaattcttc 2855915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 2790672 - 2790491
Alignment:
Q  7 tcgaagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgatttgtcatcaattttgtgtaacaactgcaaaagagggcttt 106  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||| |||||||| ||||||||||||| |||||||||||||| ||    
T  2790672 tcgaagaatatcaaatactttttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggcctt 2790573  T
Q  107 cagtttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||||||||||    
T  2790572 cagtttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgaatgattgagaaacggtgatgcaagcacg 2790491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 2807616 - 2807300
Alignment:
Q  10 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgatttgtcatcaattttgtgtaacaactgcaaaagagggctttcag 109  Q
    ||||||||||||||| | ||||||||||||||||||||||||| || ||||| |||||||||||| | |||| |||||   |    |||||||  |||||    
T  2807616 aagaatatcaaatacctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcag 2807517  T
Q  110 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacgataatcaaattttgttgttac 209  Q
    ||||   |||||||| |||||||||||| ||||  | ||| ||||| |||||||| |||||||||||||||||||||||| ||||||| | |||||||||    
T  2807516 tttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttac 2807417  T
Q  210 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaac 309  Q
    | |||| || || ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||||||   ||||| | ||||    
T  2807416 cgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataac 2807317  T
Q  310 caaccagacaattcttc 326  Q
    ||| |||||| ||||||    
T  2807316 caaacagacatttcttc 2807300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 5413235 - 5412919
Alignment:
Q  10 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgatttgtcatcaattttgtgtaacaactgcaaaagagggctttcag 109  Q
    ||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||   |||||| ||||||||||||| ||||  ||||| |  |||||    
T  5413235 aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcag 5413136  T
Q  110 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacgataatcaaattttgttgttac 209  Q
    || | | |||||||| |||||||||||| ||||| |  || ||||| |||||||| ||||||||||  | |||||||| | ||||||| | || || |||    
T  5413135 ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgatac 5413036  T
Q  210 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaac 309  Q
    |||||| || || ||||||||||||||||||||||||||||||||  | |||||||| |||||||| || ||||| || || ||||  || || | ||||    
T  5413035 cttttggctttcaaaaactagcttggcaagagtggtttttcctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataac 5412936  T
Q  310 caaccagacaattcttc 326  Q
    |||||||||||||||||    
T  5412935 caaccagacaattcttc 5412919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 2838389 - 2838694
Alignment:
Q  10 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgatttgtcatcaattttgtgtaacaactgcaaaagagggctttcag 109  Q
    ||||||||||| ||| | |||||||| |||||||||||||||| |  ||||| ||| | ||||||  ||||||| |||| |||   |||||||  |||||    
T  2838389 aagaatatcaagtacctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcag 2838488  T
Q  110 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacgataatcaaattttgttgttac 209  Q
    || | | |||||||| |||||||||||| ||||| |  || ||||| |||||||| |||||||||| || |||||||  | ||||||| |||| ||||||    
T  2838489 ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttac 2838588  T
Q  210 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaac 309  Q
    |||||| || || ||||||||||||||||||||||||||||||||| | |||||||| |||||||| || ||||||||||||||||  ||||| | ||||    
T  2838589 cttttggctttcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataac 2838688  T
Q  310 caacca 315  Q
    ||||||    
T  2838689 caacca 2838694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 2769418 - 2769102
Alignment:
Q  10 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgatttgtcatcaattttgtgtaacaactgcaaaagagggctttcag 109  Q
    ||||||||||||||| | |||||||| ||||||| ||| || | ||| | || |||  ||||||| ||||||||||||| ||  |  |||||   |||||    
T  2769418 aagaatatcaaatacctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcag 2769319  T
Q  110 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacgataatcaaattttgttgttac 209  Q
    ||||   |||||||| ||||||||| || |||| || ||| ||||| |||||||| |||||||||| ||||||||||||| ||||||| ||||  |||||    
T  2769318 tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttac 2769219  T
Q  210 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaac 309  Q
    |||||| |||||  ||||||| |||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||| |||||  ||||| | ||||    
T  2769218 cttttggctgtcataaactagtttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataac 2769119  T
Q  310 caaccagacaattcttc 326  Q
    |||||| | ||||||||    
T  2769118 caaccaaataattcttc 2769102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 2749344 - 2749028
Alignment:
Q  10 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgatttgtcatcaattttgtgtaacaactgcaaaagagggctttcag 109  Q
    ||||||||||||||| | ||||||||||||||||||||||||| |||||| | ||| | |||||| ||||||||||||| ||||| ||||| |  || ||    
T  2749344 aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag 2749245  T
Q  110 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacgataatcaaattttgttgttac 209  Q
    |    | ||| |||| |||||||||||| ||||| |  || ||||| ||||| || |||||||||| || |||||||||| ||||||| | || || |||    
T  2749244 tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatac 2749145  T
Q  210 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaac 309  Q
    |||||  || || ||||||||||||||||||||||||||||||||  |||||||||| ||||| || ||||| ||||||||||||   || || | ||||    
T  2749144 ctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataac 2749045  T
Q  310 caaccagacaattcttc 326  Q
    |||||||||| ||||||    
T  2749044 caaccagacagttcttc 2749028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 2759563 - 2759258
Alignment:
Q  10 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgatttgtcatcaattttgtgtaacaactgcaaaagagggctttcag 109  Q
    ||||||||||||||| | |||||||  ||||||| ||| || | | |||||| |||  ||||||| ||||||||||||  ||    |||||||  |||||    
T  2759563 aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag 2759464  T
Q  110 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacgataatcaaattttgttgttac 209  Q
    ||||   |||||||| | ||||||| || |||| ||  || ||||| |||||||| ||||||||| ||||||||||  || ||||||| | |||||||||    
T  2759463 tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttac 2759364  T
Q  210 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaac 309  Q
    |||||| ||||| |||||||||||||||||||||||||| || ||| | |||||||| |||||||||||||||||||| |||||||  ||||| | ||||    
T  2759363 cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataac 2759264  T
Q  310 caacca 315  Q
    ||||||    
T  2759263 caacca 2759258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 119 - 315
Target Start/End: Complemental strand, 2818797 - 2818601
Alignment:
Q  119 aaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacgataatcaaattttgttgttaccttttgact 218  Q
    |||||| ||||||||| || |||| ||  || ||||| |||||||| ||||||||| |||||||||| ||| ||||||| | ||||||||||||||| ||    
T  2818797 aaaattgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggct 2818698  T
Q  219 gtcgaaaactagcttggcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaacca 315  Q
    ||| ||||||||||||||||||||||||||||||||| | |||||||| |||||||| |||||||||||||| ||||  ||||| | ||||||||||    
T  2818697 gtcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaacca 2818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 2790491 - 2790396
Alignment:
Q  235 gcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattcttccctc 330  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  2790491 gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctc 2790396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 5941 - 6226
Alignment:
Q  10 aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgatttgtcatcaattttgtgtaacaactgcaaaagagggctttcag 109  Q
    ||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||||  |||  |||||||  |||||    
T  5941 aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcag 6040  T
Q  110 tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgactgagaaactgcgatgcaagcacgataatcaaattttgttgttac 209  Q
    |||| | |||||||| |||||||||||| || | || ||| |||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||    
T  6041 tttcccgacaaaattgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttac 6140  T
Q  210 cttttgactgtcgaaaactagcttggcaagagtggtttttcctagatctcccattccaaccactgaaatcactgtgcgctcagctg 295  Q
    |||||| ||||| |||||||||||||||||||||||||| |||| | |||||||||| ||||||||||| || |||||||||||||    
T  6141 cttttggctgtcaaaaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaattacggtgcgctcagctg 6226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University