View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13359_low_13 (Length: 267)

Name: NF13359_low_13
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13359_low_13
NF13359_low_13
[»] chr5 (28 HSPs)
chr5 (39-221)||(8456910-8457092)
chr5 (45-203)||(38397616-38397773)
chr5 (44-200)||(6257362-6257517)
chr5 (44-203)||(37168985-37169143)
chr5 (44-200)||(39862439-39862594)
chr5 (41-221)||(10081144-10081326)
chr5 (44-203)||(23218503-23218661)
chr5 (44-203)||(16618522-16618680)
chr5 (44-203)||(15631631-15631790)
chr5 (97-221)||(614397-614521)
chr5 (83-216)||(9737972-9738107)
chr5 (78-221)||(11856294-11856437)
chr5 (48-221)||(25560284-25560456)
chr5 (41-221)||(42119621-42119801)
chr5 (92-221)||(36769074-36769202)
chr5 (47-221)||(29491369-29491541)
chr5 (83-207)||(3341111-3341234)
chr5 (94-207)||(27916153-27916266)
chr5 (92-221)||(6174744-6174874)
chr5 (79-195)||(10115185-10115301)
chr5 (78-218)||(33271256-33271395)
chr5 (83-204)||(29790210-29790329)
chr5 (81-198)||(10052489-10052606)
chr5 (106-205)||(15475408-15475507)
chr5 (72-126)||(2676501-2676555)
chr5 (159-221)||(10052599-10052661)
chr5 (150-221)||(22903256-22903329)
chr5 (128-180)||(19322058-19322110)
[»] chr1 (29 HSPs)
chr1 (41-221)||(38859850-38860030)
chr1 (44-203)||(48392358-48392516)
chr1 (44-203)||(42517246-42517408)
chr1 (47-203)||(5975006-5975161)
chr1 (44-203)||(7742731-7742889)
chr1 (44-203)||(49902486-49902644)
chr1 (44-221)||(47022703-47022878)
chr1 (44-203)||(10155968-10156126)
chr1 (44-203)||(3346804-3346962)
chr1 (79-221)||(10907635-10907777)
chr1 (44-203)||(23908303-23908451)
chr1 (130-221)||(30252783-30252874)
chr1 (97-221)||(26835337-26835461)
chr1 (44-203)||(29149510-29149658)
chr1 (92-207)||(30745357-30745472)
chr1 (92-207)||(30766808-30766923)
chr1 (80-221)||(44107379-44107517)
chr1 (97-221)||(5558309-5558431)
chr1 (92-221)||(42456570-42456700)
chr1 (98-216)||(14796880-14796998)
chr1 (98-216)||(14805754-14805872)
chr1 (99-207)||(13131910-13132017)
chr1 (78-216)||(26511620-26511756)
chr1 (76-156)||(37189704-37189783)
chr1 (159-216)||(37189307-37189364)
chr1 (92-205)||(45968683-45968795)
chr1 (159-207)||(8430508-8430556)
chr1 (174-221)||(1106775-1106822)
chr1 (171-221)||(44462560-44462610)
[»] chr4 (29 HSPs)
chr4 (41-221)||(17888499-17888679)
chr4 (38-203)||(1535789-1535953)
chr4 (41-221)||(31377389-31377568)
chr4 (41-221)||(11054452-11054634)
chr4 (43-216)||(20818571-20818744)
chr4 (44-221)||(35018937-35019111)
chr4 (47-203)||(49284375-49284530)
chr4 (44-198)||(16338165-16338318)
chr4 (44-203)||(36012138-36012295)
chr4 (44-203)||(37801216-37801374)
chr4 (79-203)||(34241011-34241134)
chr4 (79-203)||(25954768-25954891)
chr4 (78-221)||(46473993-46474136)
chr4 (57-216)||(9742496-9742657)
chr4 (49-203)||(46583508-46583651)
chr4 (57-206)||(322509-322663)
chr4 (61-206)||(12792200-12792345)
chr4 (47-151)||(36851342-36851446)
chr4 (48-203)||(52632536-52632680)
chr4 (78-221)||(50328795-50328938)
chr4 (92-194)||(10094393-10094495)
chr4 (93-209)||(54090191-54090307)
chr4 (92-215)||(35322704-35322827)
chr4 (94-176)||(47084056-47084138)
chr4 (97-205)||(19124743-19124851)
chr4 (159-211)||(24991962-24992014)
chr4 (128-184)||(5780790-5780846)
chr4 (94-221)||(33982001-33982130)
chr4 (159-203)||(16338311-16338354)
[»] chr2 (22 HSPs)
chr2 (44-203)||(42769710-42769868)
chr2 (44-203)||(14941996-14942154)
chr2 (44-203)||(29846460-29846618)
chr2 (44-203)||(40277240-40277398)
chr2 (44-203)||(19181566-19181724)
chr2 (44-203)||(14186390-14186548)
chr2 (41-221)||(3956571-3956751)
chr2 (97-221)||(6318463-6318588)
chr2 (94-215)||(33009677-33009799)
chr2 (92-221)||(14539704-14539833)
chr2 (117-221)||(1387313-1387416)
chr2 (97-221)||(2888040-2888164)
chr2 (44-131)||(3597842-3597929)
chr2 (128-221)||(23685406-23685499)
chr2 (97-221)||(40780054-40780179)
chr2 (102-221)||(41674716-41674836)
chr2 (78-221)||(28321689-28321832)
chr2 (92-206)||(43139760-43139875)
chr2 (144-221)||(32486243-32486320)
chr2 (41-120)||(1386111-1386190)
chr2 (147-221)||(25665223-25665297)
chr2 (139-199)||(3597914-3597973)
[»] chr3 (30 HSPs)
chr3 (40-221)||(1781761-1781942)
chr3 (44-221)||(8950456-8950631)
chr3 (39-203)||(21853215-21853378)
chr3 (42-216)||(20382523-20382695)
chr3 (44-203)||(13856117-13856275)
chr3 (44-203)||(44994920-44995079)
chr3 (38-203)||(40845863-40846027)
chr3 (44-221)||(36539631-36539808)
chr3 (44-209)||(43347288-43347453)
chr3 (44-203)||(5391475-5391633)
chr3 (79-206)||(10839367-10839494)
chr3 (78-221)||(8926765-8926909)
chr3 (82-221)||(3178703-3178841)
chr3 (72-203)||(32352865-32352995)
chr3 (97-224)||(54546901-54547027)
chr3 (80-221)||(19649360-19649502)
chr3 (117-203)||(23467519-23467604)
chr3 (92-220)||(22845362-22845488)
chr3 (97-221)||(33103743-33103866)
chr3 (105-221)||(48206853-48206968)
chr3 (122-209)||(47889736-47889824)
chr3 (92-224)||(19644327-19644461)
chr3 (92-213)||(46685784-46685903)
chr3 (90-206)||(51336224-51336339)
chr3 (94-221)||(6280361-6280487)
chr3 (44-157)||(27642723-27642836)
chr3 (128-206)||(791831-791906)
chr3 (158-221)||(36826020-36826083)
chr3 (130-221)||(47315142-47315233)
chr3 (97-177)||(50663177-50663257)
[»] chr7 (24 HSPs)
chr7 (44-203)||(34707134-34707292)
chr7 (39-203)||(10576691-10576854)
chr7 (44-203)||(34259536-34259694)
chr7 (44-203)||(44164695-44164853)
chr7 (44-203)||(29238095-29238253)
chr7 (44-203)||(29981065-29981223)
chr7 (41-209)||(19334509-19334678)
chr7 (38-221)||(10334177-10334360)
chr7 (44-203)||(29555891-29556049)
chr7 (79-203)||(24320426-24320549)
chr7 (79-205)||(33057644-33057770)
chr7 (79-221)||(17303101-17303244)
chr7 (89-203)||(32876527-32876640)
chr7 (50-198)||(9770682-9770830)
chr7 (97-221)||(26284383-26284506)
chr7 (97-176)||(15017817-15017896)
chr7 (159-221)||(2702287-2702349)
chr7 (97-221)||(43342420-43342533)
chr7 (48-114)||(2702188-2702254)
chr7 (159-205)||(23032192-23032238)
chr7 (128-221)||(41853132-41853226)
chr7 (72-114)||(41853217-41853259)
chr7 (180-221)||(25128163-25128204)
chr7 (92-152)||(23032104-23032164)
[»] chr8 (21 HSPs)
chr8 (44-209)||(35806806-35806970)
chr8 (44-203)||(22324614-22324772)
chr8 (44-206)||(42072443-42072604)
chr8 (44-203)||(26021413-26021573)
chr8 (44-203)||(21525376-21525534)
chr8 (44-203)||(33934321-33934479)
chr8 (44-203)||(42013890-42014048)
chr8 (44-221)||(10112046-10112223)
chr8 (83-206)||(24065288-24065410)
chr8 (56-171)||(16523155-16523270)
chr8 (92-221)||(19334783-19334911)
chr8 (93-205)||(43282852-43282964)
chr8 (130-221)||(34697427-34697518)
chr8 (40-205)||(21488082-21488246)
chr8 (40-221)||(16818921-16819104)
chr8 (94-166)||(16591377-16591449)
chr8 (97-176)||(2271239-2271318)
chr8 (95-206)||(2824185-2824295)
chr8 (159-209)||(23756547-23756599)
chr8 (165-221)||(16523069-16523125)
chr8 (189-221)||(16591440-16591472)
[»] chr6 (17 HSPs)
chr6 (44-203)||(9231806-9231964)
chr6 (44-203)||(24694603-24694761)
chr6 (44-203)||(13627558-13627716)
chr6 (41-221)||(28750599-28750779)
chr6 (45-203)||(14309752-14309908)
chr6 (83-216)||(13103109-13103242)
chr6 (72-195)||(1727913-1728035)
chr6 (97-221)||(34103685-34103808)
chr6 (126-205)||(11212687-11212765)
chr6 (126-205)||(11279556-11279634)
chr6 (92-206)||(27863714-27863828)
chr6 (157-221)||(24500765-24500829)
chr6 (44-142)||(11084668-11084765)
chr6 (45-164)||(24497527-24497646)
chr6 (42-119)||(34383361-34383438)
chr6 (159-205)||(7517031-7517077)
chr6 (170-203)||(11084628-11084661)
[»] scaffold0079 (2 HSPs)
scaffold0079 (44-198)||(54542-54695)
scaffold0079 (159-203)||(54506-54549)
[»] scaffold0045 (1 HSPs)
scaffold0045 (97-215)||(34457-34575)
[»] scaffold0086 (1 HSPs)
scaffold0086 (97-177)||(20836-20916)
[»] scaffold0016 (2 HSPs)
scaffold0016 (181-221)||(85510-85550)
scaffold0016 (128-168)||(85552-85592)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 8456910 - 8457092
Alignment:
Q  39 accatgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttata 138  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||| |||||    
T  8456910 accatgggcggttctatggcccggcgaccccatgcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttata 8457009  T
Q  139 taaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||  |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  8457010 taaccccctataaattgggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatatgtt 8457092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 38397773 - 38397616
Alignment:
Q  45 ggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatc 144  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||||||| |    
T  38397773 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 38397674  T
Q  145 cctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  38397673 cctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 38397616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 6257362 - 6257517
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||| |||     
T  6257362 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaac 6257461  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttat 200  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  6257462 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttat 6257517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 37168985 - 37169143
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| || || |||||||||||||||| |||||||||     
T  37168985 gggcggttctaaggcccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaac 37169084  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  37169085 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 37169143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 39862439 - 39862594
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||| || |||| ||||||||||| |||||||||     
T  39862439 gggcggttctaaggcccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 39862538  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttat 200  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  39862539 ccctataaattgggcaatttctttagatttttt-attatttgcttgcaatttcttat 39862594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 10081326 - 10081144
Alignment:
Q  41 catgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttg--caatttcttatgcaaatccctatgaattttttata 138  Q
    |||||||||||||| |||||||||| |||  ||||||||||||||||||| |||| ||||||   |||||||||||| |||||||||||||||| |||||    
T  10081326 catgggcggttctatggcccggcgatcccaggcactcgcccgggctctggcccaattttttttttcaatttcttatgtaaatccctatgaatttcttata 10081227  T
Q  139 taaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||| ||||    
T  10081226 taaacccctataaattgggcaatttctttagatttttttattatttgcttacaatttcttatgtaaactcctataaatgtgtt 10081144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 23218661 - 23218503
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||||||||| |||| ||||||||||||| || |||||||| ||||||||||||||| || |||||||||||||||| |||||||||     
T  23218661 gggcggttctaaggcccggcgatcccgggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 23218562  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  23218561 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 23218503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 16618522 - 16618680
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||| || |||||||||||||||| |||||||||     
T  16618522 gggcggttctaaggcccggcgaccccgggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataaac 16618621  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
     ||||||||||||  ||||| |||| ||||||| ||||||||||||||||||||||||||    
T  16618622 tcctataaattggacaatttttttatatttttt-attatttgcttgcaatttcttatgta 16618680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 15631790 - 15631631
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaa- 142  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| ||||||||| |  |||||||||||||||| |||||||||     
T  15631790 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttatataaac 15631691  T
Q  143 tccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
     |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  15631690 cccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 15631631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 97 - 221
Target Start/End: Original strand, 614397 - 614521
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttc 196  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||    
T  614397 ttttttgcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttgcaatttc 614496  T
Q  197 ttatgtaaacccttataaatatgtt 221  Q
    |||||||||| | ||||||| ||||    
T  614497 ttatgtaaacacctataaatgtgtt 614521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 9737972 - 9738107
Alignment:
Q  83 ggctctgggccaaattttttgcaatttcttatgcaaa--tccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgatt 180  Q
    |||||||  |||| |||||| |||||||||||| |||  ||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||| ||    
T  9737972 ggctctgacccaattttttttcaatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaatttctttagattttttgttt 9738071  T
Q  181 atttgcttgcaatttcttatgtaaacccttataaat 216  Q
    |||||||||||||||||||||||||||| |||||||    
T  9738072 atttgcttgcaatttcttatgtaaacccctataaat 9738107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 11856437 - 11856294
Alignment:
Q  78 gcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttg 177  Q
    |||||||||  || |||| |||| || ||||||||||| ||||| || ||||||| ||||||||||| |||||||||||| |||||||||||||||||||    
T  11856437 gcccgggcttcggcccaagttttctgtaatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagattttttg 11856338  T
Q  178 attatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||    
T  11856337 attatttacttgcaatttcttatgtaaactcctataaatatgtt 11856294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 25560284 - 25560456
Alignment:
Q  48 ggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccct 147  Q
    ||||||| |||||||| ||||||  |||||| |||||||| ||  ||| |||||| |||||||||||| |||||| ||| ||||| |||||||||   ||    
T  25560284 ggttctatggcccggcaaccccggccactcgtccgggctccggctcaattttttt-caatttcttatgtaaatccttataaatttcttatataaacatct 25560382  T
Q  148 ataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||  |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  25560383 ataaattggacaatttctttagattattttattatttgcttgcaatttcttatgtaaacccatataaatgtgtt 25560456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 42119801 - 42119621
Alignment:
Q  41 catgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatata 140  Q
    |||||||||||  |||| ||||||| || | ||| ||| |||||||||   || ||||||||| ||||||||||| |||| ||| ||||||| |||||||    
T  42119801 catgggcggtttgaaggtccggcgagccggggcagtcgtccgggctctaacccgaattttttgtaatttcttatgtaaattcctctgaatttcttatata 42119702  T
Q  141 aatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    || | |||||||||||  |||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||| ||||    
T  42119701 aacctctataaattggacaatttctttagatttttttattatttgtttgtaatttcttatgtaaacccctataaatgtgtt 42119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 36769074 - 36769202
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    |||||||||||||||||||||||| |||| ||| ||||||| ||||||||| | |||| |||| || |||||||||||| ||||||||||||||||||||    
T  36769074 ccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttaga-tttttgattatttgcttgca 36769172  T
Q  192 atttcttatgtaaacccttataaatatgtt 221  Q
    ||||| ||||||||||| ||||||| ||||    
T  36769173 atttcatatgtaaacccctataaatgtgtt 36769202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 29491369 - 29491541
Alignment:
Q  47 cggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccc 146  Q
    |||||| | |||||||||||||||  |||||| |||||||   | |||||| ||||||||||||||||| ||||  |||||||||| ||||||||  |||    
T  29491369 cggttcgatggcccggcgaccccggacactcgtccgggcttcagcccaaatcttttgcaatttcttatgtaaatttctatgaatttcttatataac-ccc 29491467  T
Q  147 tataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||  |||| ||||| |||||||||||||||||||||||||||||||| |||| | ||||||| ||||    
T  29491468 tataaattggacaatt-ctttaaattttttgattatttgcttgcaatttcttatgcaaacacatataaatgtgtt 29491541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 3341111 - 3341234
Alignment:
Q  83 ggctctgggccaaattttttgcaatttcttatgcaaatccctatgaatttt-ttatataaatccctataaattgggaaatttctttagattttttgatta 181  Q
    |||||||| |||||||||||||||||||||||| |||| | | |||||||| ||||||||  ||||||||||||||||||||||||||  ||||||||||    
T  3341111 ggctctggcccaaattttttgcaatttcttatgtaaattc-tctgaatttttttatataatcccctataaattgggaaatttctttag-ctttttgatta 3341208  T
Q  182 tttgcttgcaatttcttatgtaaacc 207  Q
    ||||||| |||||| |||||||||||    
T  3341209 tttgctttcaattttttatgtaaacc 3341234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 27916266 - 27916153
Alignment:
Q  94 aaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaat 193  Q
    |||||||||||||||||||||| |||| ||| ||||||| |||||||||  ||||||||||| | |||||| ||||||||||| |||||||| |||||||    
T  27916266 aaattttttgcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattagatttttttattatttgtttgcaat 27916167  T
Q  194 ttcttatgtaaacc 207  Q
    ||||||| ||||||    
T  27916166 ttcttatataaacc 27916153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 6174874 - 6174744
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccc--tataaattgggaaatttctttagattttttgattatttgcttg 189  Q
    |||||||||||| ||||||||| | |||| | | ||||||| ||||||||| |||  ||||||||||  |||||||||| ||||||| ||||||||||||    
T  6174874 ccaaattttttgtaatttcttacgtaaattcttctgaatttcttatataaacccccctataaattggacaatttctttatatttttt-attatttgcttg 6174776  T
Q  190 caatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||| |||||||||||  |||||||||||    
T  6174775 caatttcctatgtaaacccccataaatatgtt 6174744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 195
Target Start/End: Complemental strand, 10115301 - 10115185
Alignment:
Q  79 cccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttga 178  Q
    ||||||||| || |||| ||||||||||||| ||||| |||| ||| || |||| ||||||||| ||| ||||||| |  |||||||||||||||||| |    
T  10115301 cccgggctccggcccaatttttttgcaattttttatgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttagattttttaa 10115202  T
Q  179 ttatttgcttgcaattt 195  Q
    |||||||||||||||||    
T  10115201 ttatttgcttgcaattt 10115185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 33271256 - 33271395
Alignment:
Q  78 gcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttg 177  Q
    |||||| ||| || |||| |||||| |||||||||||| |||| ||  ||||||| ||||||||| | |||||||||||  |||||||||| |||||||     
T  33271256 gcccggactccggcccaatttttttacaatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaatttctttatatttttt- 33271354  T
Q  178 attatttgcttgcaatttcttatgtaaacccttataaatat 218  Q
    |||||||| ||| |||||||||| ||||||| |||||||||    
T  33271355 attatttgtttgtaatttcttatataaacccctataaatat 33271395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 29790210 - 29790329
Alignment:
Q  83 ggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattat 182  Q
    |||||||  ||||| ||||| |||||||||||| |||| | ||||||||| ||||||||| |  ||||||||||| |||||||||||  |||||||||||    
T  29790210 ggctctgacccaaaatttttacaatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttctttag--tttttgattat 29790307  T
Q  183 ttgcttgcaatttcttatgtaa 204  Q
    ||||||  ||||||||||||||    
T  29790308 ttgcttttaatttcttatgtaa 29790329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 10052489 - 10052606
Alignment:
Q  81 cgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgatt 180  Q
    ||||||| || |||| |||||| |||||||||||| |||||||| |||| |  |||||||||   ||||||||| || |||||||||| | |||| ||||    
T  10052489 cgggctccggcccaatttttttacaatttcttatgtaaatccctctgaactacttatataaacgtctataaattaggtaatttctttaaaattttagatt 10052588  T
Q  181 atttgcttgcaatttctt 198  Q
    ||||||||||||||||||    
T  10052589 atttgcttgcaatttctt 10052606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 15475408 - 15475507
Alignment:
Q  106 atttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaa 205  Q
    |||||||||| ||||  || | |||||||||||||||||  |||||||||  ||||||||||| ||||||  ||||||| || | |||||||||||||||    
T  15475408 atttcttatgtaaatttctcttaattttttatataaatctatataaattgaaaaatttctttaaatttttgtattattttctcgtaatttcttatgtaaa 15475507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 2676501 - 2676555
Alignment:
Q  72 gcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctat 126  Q
    ||||||||||||||||||| |||| |||||| |||||||||||| ||| ||||||    
T  2676501 gcactcgcccgggctctggtccaattttttttcaatttcttatgtaaacccctat 2676555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 10052599 - 10052661
Alignment:
Q  159 aatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||| | ||||  ||||||||||||||||||||||||||||  | ||||||||||||    
T  10052599 aatttctttaaaattttaaattatttgcttgcaatttcttatgtaaaagcctataaatatgtt 10052661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 22903329 - 22903256
Alignment:
Q  150 aaattgggaaatttctttagattttttgattattt--gcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||| ||||||||||| |||||| ||| |||  |||||||||||||||||||||||  ||||||| ||||    
T  22903329 aaattgggcaatttctttagttttttttattctttttgcttgcaatttcttatgtaaacctctataaatgtgtt 22903256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 19322058 - 19322110
Alignment:
Q  128 aattttttatataaatccctataaattgggaaatttctttagattttttgatt 180  Q
    ||||| |||||||||  ||||||||||||| |||| |||||||||||||||||    
T  19322058 aatttcttatataaactcctataaattgggcaattactttagattttttgatt 19322110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 38860030 - 38859850
Alignment:
Q  41 catgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatata 140  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| |||| ||||||||||| |||||||    
T  38860030 catgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatata 38859931  T
Q  141 aatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    || |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  38859930 aacccctataaattgggcaatttttttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgtt 38859850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 48392358 - 48392516
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||||||||||| || |||||||||||||||| | ||||| |||||||||||||||| || |||||||||||||||| ||||||||||    
T  48392358 gggcggttctaaggcccggcgacctcgggcactcgcccgggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaat 48392457  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||    
T  48392458 ccctataaattgggcaatttcattacatttttt-attatttgcttgcaatttcttatgta 48392516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 42517246 - 42517408
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||     
T  42517246 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42517345  T
Q  144 ----ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
        |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  42517346 aaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 42517408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 5975161 - 5975006
Alignment:
Q  47 cggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccc 146  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| || ||||||||| |||||| ||||||||| |||    
T  5975161 cggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacccc 5975062  T
Q  147 tataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||    
T  5975061 tataaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 5975006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 7742731 - 7742889
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| |||||||||||||||| | || || |||||||||||||||| || |||||| ||||||||| |||||||||     
T  7742731 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaatccttatgaatttcttatataaac 7742830  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  7742831 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 7742889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 49902644 - 49902486
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||| |||||||| ||| |||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||     
T  49902644 gggcggttctaaggtccggcgactccgggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 49902545  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  49902544 ccctataaatagggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 49902486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 47022878 - 47022703
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||| |||||||||| |||||||||     
T  47022878 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 47022779  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
     |||||||||| || |||||||||| ||||||| ||||||| |||| |||||||||||||  ||| ||||||||||||    
T  47022778 tcctataaattaggcaatttctttatatttttt-attatttacttgtaatttcttatgtacgccc-tataaatatgtt 47022703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 10155968 - 10156126
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| || |||| ||||||||||| |||||||||     
T  10155968 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 10156067  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
      |||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  10156068 ttctataaattggacaatttctttatatttttt-attatttgcttgcaatttcttatgta 10156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 3346962 - 3346804
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||| |||||||| || |||| |||| ||||||||||| |||  ||||||||||||||||||||| || || |||||||||||||||| |||||||||     
T  3346962 gggcgattctaaggtccagcgatcccgggcactcgcccgagcttcgggccaaattttttgcaatttgttgtgtaaatccctatgaatttcttatataaac 3346863  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  3346862 ccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 3346804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 10907635 - 10907777
Alignment:
Q  79 cccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttga 178  Q
    ||||||||| || |||||||||||||||||||||||| |||| ||| ||||||| ||||||||| ||||||||||  |  ||||||||||||||||||||    
T  10907635 cccgggctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttagattttttga 10907734  T
Q  179 ttatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||||||||||||||||| || | ||||||| ||||    
T  10907735 ttatttgcttgcaatttcttatgtagacacctataaatgtgtt 10907777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 23908451 - 23908303
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||          || |||| ||||||||||| ||||||||||    
T  23908451 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaattttttg----------tgtaaattcctatgaatttcttatataaat 23908362  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||  ||||||||||  |||||| ||||||||||||||||||||||||||    
T  23908361 ccctataaattggacaatttctttatgtttttt-attatttgcttgcaatttcttatgta 23908303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 30252783 - 30252874
Alignment:
Q  130 ttttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30252783 ttttttatataaatccctataaattagacaacttctttagattttttgattatttgcttgcaatttcttatgtaaacccctataaatatgtt 30252874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 26835461 - 26835337
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttc 196  Q
    ||||||||||||| ||||| |||| | ||||||||| |||||||||  |||||||||||   ||||| ||||||||||||||||||||||||||||||||    
T  26835461 ttttttgcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttgcaatttc 26835362  T
Q  197 ttatgtaaacccttataaatatgtt 221  Q
    | |||||||||| ||||||| ||||    
T  26835361 tcatgtaaacccatataaatgtgtt 26835337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 29149510 - 29149658
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||| ||||||| |||||||||  |||||||||||||||| || ||||||||||||          || |||||||||||||||| |||||||||     
T  29149510 gggcggttttaaggcctggcgaccccaggcactcgcccgggctccggaccaaattttttg----------tgtaaatccctatgaatttcttatataaac 29149599  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| ||||||||||  |||||| ||||||||||||||||||||||||||    
T  29149600 ccctataaattgggcaatttctttacgtttttt-attatttgcttgcaatttcttatgta 29149658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 30745472 - 30745357
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    |||||| ||||||||||| ||||| ||||  || ||||||| || ||||||||||||||||||||  |||||||||| ||||||||||||||| ||||||    
T  30745472 ccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgca 30745373  T
Q  192 atttcttatgtaaacc 207  Q
    ||||||||||||||||    
T  30745372 atttcttatgtaaacc 30745357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 30766923 - 30766808
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    |||||| ||||||||||| ||||| ||||  || ||||||| || ||||||||||||||||||||  |||||||||| ||||||||||||||| ||||||    
T  30766923 ccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgca 30766824  T
Q  192 atttcttatgtaaacc 207  Q
    ||||||||||||||||    
T  30766823 atttcttatgtaaacc 30766808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 44107379 - 44107517
Alignment:
Q  80 ccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgat 179  Q
    |||||||| || |||| ||||||||   |||||||| |||| ||| ||| ||||||||||||| |||||||||||    |||||||| ||||||||||||    
T  44107379 ccgggctccggtccaatttttttgc---ttcttatgtaaattcctctgatttttttatataaacccctataaattaattaatttcttcagattttttgat 44107475  T
Q  180 tatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||| |||||||||||||||||||| |||||||||| ||||    
T  44107476 tatttacttgcaatttcttatgtaaaaccttataaatgtgtt 44107517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 5558431 - 5558309
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttc 196  Q
    ||||||||||||||||||| ||| || |  |||||| ||||||||| |||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  5558431 ttttttgcaatttcttatgtaaa-ccttccgaatttcttatataaacccctataaattggacaatttctttagattttt-gattatttgcttgcaatttc 5558334  T
Q  197 ttatgtaaacccttataaatatgtt 221  Q
     ||| ||||| | ||||||||||||    
T  5558333 atatataaactcctataaatatgtt 5558309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 42456700 - 42456570
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    ||||||||||||| |||||||||| |||| ||||||||||| ||||||||| |||||||||||||| |||||||||| |    || ||||| | ||||||    
T  42456700 ccaaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttaaaaaaatttattatctacttgca 42456601  T
Q  192 atttcttatgtaaa-cccttataaatatgtt 221  Q
    |||||||||||||| ||| ||||||| ||||    
T  42456600 atttcttatgtaaatcccctataaatgtgtt 42456570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 216
Target Start/End: Complemental strand, 14796998 - 14796880
Alignment:
Q  98 tttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttct 197  Q
    |||||||||||| ||||| |||| ||| ||||||| ||||||| |  | |||||||| ||  ||| |||||||||||| || ||||||||||||||||||    
T  14796998 tttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttct 14796899  T
Q  198 tatgtaaacccttataaat 216  Q
    ||||||||||| |||||||    
T  14796898 tatgtaaacccgtataaat 14796880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 216
Target Start/End: Complemental strand, 14805872 - 14805754
Alignment:
Q  98 tttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttct 197  Q
    |||||||||||| ||||| |||| ||| ||||||| ||||||| |  | |||||||| ||  ||| |||||||||||| || ||||||||||||||||||    
T  14805872 tttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttct 14805773  T
Q  198 tatgtaaacccttataaat 216  Q
    ||||||||||| |||||||    
T  14805772 tatgtaaacccgtataaat 14805754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 13132017 - 13131910
Alignment:
Q  99 ttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttctt 198  Q
    ||||| ||||||||||| |||| ||| | ||||||||||||||||| |||||||||||  |||||||||||  |||||  |||| | |||||||||||||    
T  13132017 ttttgtaatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaatttctttag-ctttttacttatctccttgcaatttctt 13131919  T
Q  199 atgtaaacc 207  Q
    |||||||||    
T  13131918 atgtaaacc 13131910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 26511620 - 26511756
Alignment:
Q  78 gcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttg 177  Q
    |||||||||| || | || ||||||||||||||||||| ||| |||  ||||||| |||||||||| ||| |||||||   |||||||||| ||||| ||    
T  26511620 gcccgggctccggcctaatttttttgcaatttcttatgtaaaccccc-tgaatttcttatataaattcctgtaaattgaataatttctttaaatttt-tg 26511717  T
Q  178 attatttgcttgcaatttcttatgtaaacccttataaat 216  Q
    ||||||| ||| |||||||||| ||||| || |||||||    
T  26511718 attatttacttacaatttcttacgtaaatccctataaat 26511756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 37189783 - 37189704
Alignment:
Q  76 tcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgg 156  Q
    |||||||| ||| || |||||||||| ||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||    
T  37189783 tcgcccggactccggcccaaattttt-gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 37189704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 37189364 - 37189307
Alignment:
Q  159 aatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaat 216  Q
    ||||| |||| |||||||||||||||| |||||||||||||||||||||  |||||||    
T  37189364 aatttatttaaattttttgattatttgtttgcaatttcttatgtaaacctctataaat 37189307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 45968795 - 45968683
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    |||||||||||||||| | ||||| || | |   ||||||||||||||||   | ||||||||||  ||||| | ||||||||| |||||||| ||||||    
T  45968795 ccaaattttttgcaatattttatgtaagttctcctgaattttttatataatctcttataaattggacaatttttatagattttt-gattatttacttgca 45968697  T
Q  192 atttcttatgtaaa 205  Q
    ||||||||||||||    
T  45968696 atttcttatgtaaa 45968683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 8430508 - 8430556
Alignment:
Q  159 aatttctttagattttttgattatttgcttgcaatttcttatgtaaacc 207  Q
    |||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  8430508 aatttctttaaatttttttattatttgcttgcaatttcttatgttaacc 8430556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 1106822 - 1106775
Alignment:
Q  174 tttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  1106822 tttgattatttgcttgcaatttcttatgtaaattcttataaatgtgtt 1106775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 44462560 - 44462610
Alignment:
Q  171 ttttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||||||| |||||| |||||||| ||||||| || |||||||||    
T  44462560 ttttttgattatttacttgcagtttcttatataaacccctaaaaatatgtt 44462610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 17888499 - 17888679
Alignment:
Q  41 catgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatata 140  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||| || ||||||||||| |||||||||||| |||| ||||||||||| |||||||    
T  17888499 catgggcggttctatggccaggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatata 17888598  T
Q  141 aatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |  |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  17888599 accccctataaattgggcaatttctttagatttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgtt 17888679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 1535953 - 1535789
Alignment:
Q  38 aaccatgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttat 137  Q
    ||||| ||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||    
T  1535953 aaccaggggcggttctaaggcccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttat 1535854  T
Q  138 ataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    ||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  1535853 ataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 1535789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 31377568 - 31377389
Alignment:
Q  41 catgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatata 140  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  31377568 catgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttt-caatttcttatgtaaatccctatgaatttcttatata 31377470  T
Q  141 aatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |  | |||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||  ||||||| ||||    
T  31377469 accctctataaattgggcaatttctttagattttttaactatttgcttgcaatttcttatgtaaaccgctataaatgtgtt 31377389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 11054634 - 11054452
Alignment:
Q  41 catgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatata 140  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||| || |||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  11054634 catgggcggttctatggcccggcgaccccgagcactcacccgggctccggtccaa-ttttttgcaatttcttatgtaaatccctatgaatttcttatata 11054536  T
Q  141 aatccctataaattgggaaatttctttag---attttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    || | |||||||||||| ||| |||||||    ||||||  ||||||||||||||||||||||||||||| |||||||| ||||    
T  11054535 aacctctataaattgggcaatctctttagtattttttttatttatttgcttgcaatttcttatgtaaacctttataaatgtgtt 11054452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 43 - 216
Target Start/End: Complemental strand, 20818744 - 20818571
Alignment:
Q  43 tgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaa 142  Q
    |||||||||||| |  |||||||| ||| ||||||||||||||||||  ||||||||||||||||||||| || |||||||||||||||| |||||||||    
T  20818744 tgggcggttctatgatccggcgactccgggcactcgcccgggctctgacccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaa 20818645  T
Q  143 tccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaat 216  Q
      ||||||||||||  ||||| ||||||||||||||||||||| |||||||||||||||||||||  |||||||    
T  20818644 ctcctataaattggtcaatttttttagattttttgattatttgtttgcaatttcttatgtaaacctctataaat 20818571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 35019111 - 35018937
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| || |||| ||||||||||| |||||||||     
T  35019111 gggcggttctaaggcccggcgaccctgggcactcgcccgggctctgggccaaattttttacaatttcttgtgtaaat-cctatgaatttcttatataaac 35019013  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    || |||||||| || |||||||||| ||||||| |||||||||||||||||||||||||| | |||||||||| ||||    
T  35019012 ccttataaattaggtaatttctttacatttttt-attatttgcttgcaatttcttatgtaca-ccttataaatgtgtt 35018937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 49284530 - 49284375
Alignment:
Q  47 cggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccc 146  Q
    |||||||||||||| |||| |||| ||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||||||| |||    
T  49284530 cggttctaaggcccagcgaacccgggcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccc 49284431  T
Q  147 tataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    ||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||    
T  49284430 tataaattgggcaatttctttacatttttt-attatttgtttgcaatttcttatgta 49284375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 44 - 198
Target Start/End: Original strand, 16338165 - 16338318
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| ||| ||||||||  || ||||||| ||||||||||||| || || |||| ||||||||||||||||||||||    
T  16338165 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaat 16338264  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttctt 198  Q
    |||||||||||||  |||||||||| ||||||| |||||||||||||||||||||    
T  16338265 ccctataaattggacaatttctttacatttttt-attatttgcttgcaatttctt 16338318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 36012138 - 36012295
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||| | ||||||| | |||||  ||||||||||||||||||||| || || |||||||||||||||| |||||||||     
T  36012138 gggcggttctaaggcccggcgaccctgggcactcgtc-gggcttcgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaac 36012236  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||||||| |||||||    
T  36012237 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaattttttatgta 36012295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 37801216 - 37801374
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||||| ||| | |  ||| ||| |||||||| |||| ||||||||||||||||||| || ||||  |||||||||||||||||||||    
T  37801216 gggcggttctaaggcccgacgatctcaggcattcgtccgggctccgggctaaattttttgcaatttcttgtgtaaatttctatgaattttttatataaat 37801315  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||    
T  37801316 ccctataaattgggcaaattctttacatttttt-attatttgcttgcaatttcttatgta 37801374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 34241134 - 34241011
Alignment:
Q  79 cccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttga 178  Q
    ||||||||| |||||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||||| |    
T  34241134 cccgggctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaatttctttacatttttt-a 34241036  T
Q  179 ttatttgcttgcaatttcttatgta 203  Q
    |||||||||||||||||||||||||    
T  34241035 ttatttgcttgcaatttcttatgta 34241011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 25954891 - 25954768
Alignment:
Q  79 cccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttga 178  Q
    ||||||||| |||||||||||||||||||||||| || |||| ||||||||||| |||||||||  ||||||||||||| |||||||||| ||||||| |    
T  25954891 cccgggctccgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttctttacatttttt-a 25954793  T
Q  179 ttatttgcttgcaatttcttatgta 203  Q
    |||||||||||||||||||||||||    
T  25954792 ttatttgcttgcaatttcttatgta 25954768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 46474136 - 46473993
Alignment:
Q  78 gcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttg 177  Q
    ||||| |||| || |||||||||||||||||||||||| |||| ||| ||||||||||||||||| || |||||||||   |||||||||||||||||      
T  46474136 gcccgagctccggcccaaattttttgcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaatttctttagatttttgt 46474037  T
Q  178 attatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||    
T  46474036 attatttgcttgtaatttcttatgtaaatccttataaatgtgtt 46473993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 216
Target Start/End: Original strand, 9742496 - 9742657
Alignment:
Q  57 gcccggcgaccccgagcactcgcccgggctctgggccaaattttttg---caatttcttatgcaaatccctatgaattttttatataaatccctataaat 153  Q
    |||||||||||||| |||| ||| | |||||||| |||| ||||||    |||||||||||| |||| ||| ||||||| |||||| || ||||||||||    
T  9742496 gcccggcgaccccg-gcacgcgcaccggctctggcccaattttttttttacaatttcttatgtaaattcctctgaatttcttatattaacccctataaat 9742594  T
Q  154 tgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaat 216  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||||||||| | |||||||    
T  9742595 tgggcaatttctttagattttttgattattttcatgcaatttcttatgtaaacacctataaat 9742657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 46583508 - 46583651
Alignment:
Q  49 gttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatcccta 148  Q
    ||||||||| |||||||||||| |||||||||||||||| ||| |||||||||||          || |||||||||||||||| ||||||||| |||||    
T  46583508 gttctaaggtccggcgaccccgggcactcgcccgggctccgggtcaaattttttg----------tgtaaatccctatgaatttcttatataaaccccta 46583597  T
Q  149 taaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||| || |||||||||| ||||||| ||||||||||||||||||||||||||    
T  46583598 taaattaggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 46583651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 322509 - 322663
Alignment:
Q  57 gcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttctta-tgcaaatccctatgaa----ttttttatataaatccctataa 151  Q
    ||||||||| |||| |||| |||||||||| ||  |||||||||||||||||| ||| || |||| ||| ||||    ||| ||||||||| ||||||||    
T  322509 gcccggcgatcccgggcacgcgcccgggctatgacccaaattttttgcaattttttaatgtaaattcctctgaaggaatttcttatataaacccctataa 322608  T
Q  152 attgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaac 206  Q
    |||||  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  322609 attggacaatttctttaaattttttgattatttgcttgcaatttcttatgtaaac 322663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 12792200 - 12792345
Alignment:
Q  61 ggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaa 160  Q
    ||||| |||| |||| || ||||||| ||| |||| ||||||| ||||||||||| ||||  || ||||||| ||||||||| |||||||||||||| ||    
T  12792200 ggcgatcccgggcacgcgtccgggctttggcccaatttttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaa 12792299  T
Q  161 tttctttagattttttgattatttgcttgcaatttcttatgtaaac 206  Q
    || |||||||||||| ||||||||||||| |||||||||| |||||    
T  12792300 ttactttagatttttagattatttgcttgaaatttcttatataaac 12792345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 36851342 - 36851446
Alignment:
Q  47 cggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccc 146  Q
    ||||| |||||||| ||||||||| ||||||||| |||||| |||||||||||||||||||||||| || |||||||||||||||| ||||||||| |||    
T  36851342 cggttttaaggcccagcgaccccgggcactcgcctgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttattatataaacccc 36851441  T
Q  147 tataa 151  Q
    |||||    
T  36851442 tataa 36851446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 203
Target Start/End: Complemental strand, 52632680 - 52632536
Alignment:
Q  48 ggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccct 147  Q
    ||||||||||||||| ||||||| ||||| ||| |||||| ||||||||||| |||          || |||||||||||||||| ||||||||||||||    
T  52632680 ggttctaaggcccggtgaccccgggcacttgcctgggctccgggccaaatttcttg----------tgtaaatccctatgaatttcttatataaatccct 52632591  T
Q  148 ataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||| |||||||||| ||||||| | ||||||||||||||||||||||||    
T  52632590 ataaattgggcaatttctttacatttttt-aatatttgcttgcaatttcttatgta 52632536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 50328938 - 50328795
Alignment:
Q  78 gcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttg 177  Q
    |||||||||||||  ||| |||||||||||||||| || |||| ||| | ||||| ||||||||| | |||||||||||  |||||||||| |||||||     
T  50328938 gcccgggctctggctcaatttttttgcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaatttctttaaattttttt 50328839  T
Q  178 attatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||  |||||||||| |||||||||||||||||||| ||||    
T  50328838 attattcacttgcaattttttatgtaaacccttataaatgtgtt 50328795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 10094393 - 10094495
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    |||||||||||| ||||||||||| ||||  || ||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  10094393 ccaaattttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttatttagattttttgattatttgcttgca 10094492  T
Q  192 att 194  Q
    |||    
T  10094493 att 10094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 54090307 - 54090191
Alignment:
Q  93 caaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaa 192  Q
    |||||||||||||||| ||| || |||||||| ||||||| |||||||||  | ||||||||||| ||||| |||||||||||| |||||||||||||||    
T  54090307 caaattttttgcaattccttttgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttagatttttt-attatttgcttgcaa 54090209  T
Q  193 -tttcttatgtaaaccct 209  Q
     ||| |||||||||||||    
T  54090208 tttttttatgtaaaccct 54090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 35322704 - 35322827
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    |||| ||||||| ||||| ||||  ||||  || ||||| | ||||||||| | ||||||||||   |||||||||||||||||||||||||||||||||    
T  35322704 ccaatttttttgtaattttttatataaatttctctgaatctcttatataaacctctataaattgaacaatttctttagattttttgattatttgcttgca 35322803  T
Q  192 atttcttatgtaaacccttataaa 215  Q
    ||||||||| ||||||| ||||||    
T  35322804 atttcttatataaacccctataaa 35322827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 47084138 - 47084056
Alignment:
Q  94 aaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagatttttt 176  Q
    |||||||||||||||||||||| ||||  || ||||||| ||||||||| |||||||||||||| ||||||||||||||||||    
T  47084138 aaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttctttagatttttt 47084056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 19124743 - 19124851
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttc 196  Q
    ||||||||||||||||||| |||| ||| ||||||| |||||||||   || |||||||   |||||||||| ||||||| ||||||| ||| |||||||    
T  19124743 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacatctgtaaattgatcaatttctttaaatttttttattatttacttacaatttc 19124842  T
Q  197 ttatgtaaa 205  Q
    |||||||||    
T  19124843 ttatgtaaa 19124851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 24992014 - 24991962
Alignment:
Q  159 aatttctttagattttttgattatttgcttgcaatttcttatgtaaaccctta 211  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  24992014 aatttctttagattttatgattatttgctggcaatttcttatgtaaaccctta 24991962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 5780790 - 5780846
Alignment:
Q  128 aattttttatataaatccctataaattgggaaatttctttagattttttgattattt 184  Q
    ||||| |||||||||||| ||||||||||| |||||||||| ||||||| |||||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttctttaaatttttttattattt 5780846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 33982130 - 33982001
Alignment:
Q  94 aaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgatta--tttgcttgca 191  Q
    |||||||||  |||||||| || |||||||| | ||||| |||||||||  | |||||||| |  |||||||||||||| | | | ||  ||||||||||    
T  33982130 aaattttttaaaatttcttttgtaaatccctctaaatttcttatataaactcttataaattagataatttctttagattgtattaatatttttgcttgca 33982031  T
Q  192 atttcttatgtaaacccttataaatatgtt 221  Q
    |||| |||||||||||| | ||||| ||||    
T  33982030 attttttatgtaaacccatgtaaatgtgtt 33982001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 16338311 - 16338354
Alignment:
Q  159 aatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  16338311 aatttctttacatttttt-attatttgcttgcaatttcttatgta 16338354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 42769710 - 42769868
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||     
T  42769710 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42769809  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  42769810 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 42769868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 14941996 - 14942154
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||| |||||||||||  ||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||     
T  14941996 gggcggttctaaggctcggcgaccccggacactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 14942095  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  14942096 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 14942154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 29846618 - 29846460
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||     
T  29846618 gggcggttctaaggcccgacgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29846519  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  29846518 ccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 29846460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 40277240 - 40277398
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||    
T  40277240 gggcggttctaaggcccggcgaccccgggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttatataaat 40277339  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  40277340 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 40277398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 19181724 - 19181566
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||||||||||||||  |||||||| ||||| ||||||||||||||||||||||||| || |||| ||||||||||| |||||||||     
T  19181724 gggcggttctaaggcccggcgaccccggacactcgcctgggctatgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 19181625  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  19181624 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 19181566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 14186390 - 14186548
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||  ||||||||||| |||| ||||||||||||||| |||||||| || |||||||||||||||| |||||||||     
T  14186390 gggcggttctaaggcccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaac 14186489  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||    
T  14186490 ccctataaattgggcaatttctttacacttttt-attatttgcttgcaatttcttatgta 14186548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 3956751 - 3956571
Alignment:
Q  41 catgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatata 140  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||||| || |||||   ||| |||||| ||||| |||||||||||||||| |||||||    
T  3956751 catgggcggttctatggcccggtgaccccgggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatata 3956652  T
Q  141 aatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    || |||| ||||||||  |||||||||| | ||||| |||||||||||||||||||  |||||||||  ||||||| ||||    
T  3956651 aacccctgtaaattggacaatttctttaaaattttttattatttgcttgcaatttcaaatgtaaacctctataaatgtgtt 3956571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 221
Target Start/End: Original strand, 6318463 - 6318588
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttaga-ttttttgattatttgcttgcaattt 195  Q
    |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  6318463 tttttttcaatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagattttttttattatttgcttgcaattt 6318562  T
Q  196 cttatgtaaacccttataaatatgtt 221  Q
    |  |||||| ||| ||||||| ||||    
T  6318563 caaatgtaagcccctataaatgtgtt 6318588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 33009799 - 33009677
Alignment:
Q  94 aaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttt-tgattatttgcttgcaa 192  Q
    ||||||||| |||||||||||  |||||||||||||||| |||||||||||| ||||||||||  ||||||||||||||||| | |||||||||||||||    
T  33009799 aaattttttacaatttcttatataaatccctatgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaa 33009700  T
Q  193 tttcttatgtaaacccttataaa 215  Q
    ||| |||||||||||| ||||||    
T  33009699 ttttttatgtaaacccatataaa 33009677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 14539704 - 14539833
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    |||||||||||||||||||||||| || | ||| ||||||| |||||||||| |||||||||| || |||||||||||||||||| ||||||| ||||||    
T  14539704 ccaaattttttgcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttagatttttttattattttcttgca 14539803  T
Q  192 atttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||| ||||| | ||||||| ||||    
T  14539804 atttcttatataaacacctataaatgtgtt 14539833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 1387313 - 1387416
Alignment:
Q  117 aaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaat 216  Q
    |||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  1387313 aaatccctatgaatttcttagataaacccctataaattgggtaatttctttagatttttt-attatttgcttgcaatttcttatgtaaacccttacaaat 1387411  T
Q  217 atgtt 221  Q
     ||||    
T  1387412 gtgtt 1387416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 2888164 - 2888040
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttc 196  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||||  |||||||||||   ||||| |||||||||||| |||| ||||| ||||  ||    
T  2888164 ttttttgtaatttcttatgtaaatctctatgaattttttatataaactcctataaattgaacaatttttttagatttttttattaattgctagcaaagtc 2888065  T
Q  197 ttatgtaaacccttataaatatgtt 221  Q
    |||||||||||| ||||||||||||    
T  2888064 ttatgtaaacccctataaatatgtt 2888040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 3597842 - 3597929
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaatt 131  Q
    ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| || |||||||||| ||||    
T  3597842 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctataaatt 3597929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 23685406 - 23685499
Alignment:
Q  128 aattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||| |||||||||||| |||||||| |  ||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttatttatatattttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 23685499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 40780179 - 40780054
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaat-ccctataaattgggaaatttctttagattttttgattatttgcttgcaattt 195  Q
    ||||||| ||||||||||| |||| ||| ||||||| |||||||||  ||||||||||| |  ||||| |||| ||||||| ||||||||||||||||||    
T  40780179 ttttttgtaatttcttatgtaaattcctctgaatttcttatataaacaccctataaatttgacaatttttttaaattttttaattatttgcttgcaattt 40780080  T
Q  196 cttatgtaaacccttataaatatgtt 221  Q
    ||||||||||||  ||||||||||||    
T  40780079 cttatgtaaaccgctataaatatgtt 40780054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 41674716 - 41674836
Alignment:
Q  102 tgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttaga-ttttttgattatttgcttgcaatttcttat 200  Q
    |||||||||||||| ||||| || ||||||||||||||||| || ||||||||||  |||||||||||| |||||| | |||||||||||||||||||||    
T  41674716 tgcaatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttat 41674815  T
Q  201 gtaaacccttataaatatgtt 221  Q
     |||| || ||||||| ||||    
T  41674816 ataaatccctataaatgtgtt 41674836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 221
Target Start/End: Original strand, 28321689 - 28321832
Alignment:
Q  78 gcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttg 177  Q
    |||||||| || | |||| ||||||||||||||||||| |||| |   ||||| | ||||||||| || ||||||||||| |||||| ||  ||||||||    
T  28321689 gcccgggcacttgcccaatttttttgcaatttcttatgtaaattctcctgaatatcttatataaacccttataaattgggcaatttcattgaattttttg 28321788  T
Q  178 attatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||| ||||||||||| ||||||| ||||||| ||||    
T  28321789 attatttgcttccaatttcttatataaacccctataaatgtgtt 28321832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 43139875 - 43139760
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagatt-ttttgattatttgcttgc 190  Q
    |||| ||||||||||||||||||| || | ||| | ||||| ||||||||| |||||||||||| | |||||||||||||| |||| |||||||||||||    
T  43139875 ccaatttttttgcaatttcttatgtaagttcctcttaatttcttatataaacccctataaattgagcaatttctttagattttttttattatttgcttgc 43139776  T
Q  191 aatttcttatgtaaac 206  Q
    |||||||||| |||||    
T  43139775 aatttcttatataaac 43139760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 32486320 - 32486243
Alignment:
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||    
T  32486320 ccctataaattgggtaattttttaagattttttaattatttgcttgcaatttcttatataaacacttataaatgtgtt 32486243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 1386111 - 1386190
Alignment:
Q  41 catgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaat 120  Q
    |||||||||||||| ||| || |||||||| |||||||||||||||| |  |||| ||||||||||||||||||| ||||    
T  1386111 catgggcggttctatggctcgacgaccccgggcactcgcccgggctcggacccaatttttttgcaatttcttatgtaaat 1386190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 25665297 - 25665223
Alignment:
Q  147 tataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||  |||||  ||||||||||||    
T  25665297 tataaattgggtaatttctttaagttttttgattatttgcttgcaattttttatacaaaccgctataaatatgtt 25665223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 3597914 - 3597973
Alignment:
Q  139 taaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttctta 199  Q
    ||||||||||||||||||  |||||||||| ||||||| ||||||| ||||||||||||||    
T  3597914 taaatccctataaattggacaatttctttacatttttt-attatttacttgcaatttctta 3597973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 1781942 - 1781761
Alignment:
Q  40 ccatgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatat 139  Q
    ||||||||||||  |||||||||||| |||| ||| |||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  1781942 ccatgggcggtttcaaggcccggcgagcccgtgcagtcgcccaggctctggcccaaattttttgcaatttcttatgtaaatccctctgaatttcttatat 1781843  T
Q  140 aaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  1781842 aaaccccaataaattgggcaatttctttagattttttgattatttgcttgcaatttcgtatgtaaacccctataaatgtgtt 1781761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 8950456 - 8950631
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||    
T  8950456 gggcggttctaaggcctggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaat 8950555  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||  ||| ||||||||||||    
T  8950556 ccctataaattgggcaatttctttacatttttt-attatttgcttgaaatttcttatgtacgccc-tataaatatgtt 8950631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 21853378 - 21853215
Alignment:
Q  39 accatgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttata 138  Q
    |||| ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||    
T  21853378 accaggggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttata 21853279  T
Q  139 taaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  21853278 taaaaccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 21853215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 20382695 - 20382523
Alignment:
Q  42 atgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataa 141  Q
    ||||||||||||| |||| |||||||||| ||||| |||||||||| || |||||||||||  ||||||||||| |||||||||||||||| ||||||||    
T  20382695 atgggcggttctatggcc-ggcgaccccgggcacttgcccgggctccggcccaaattttttt-aatttcttatgtaaatccctatgaatttcttatataa 20382598  T
Q  142 atccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaat 216  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  20382597 acccctataaattgggaaatttctttagatttttttattatttgcttgcaatttcttatgtaaactcctataaat 20382523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 13856275 - 13856117
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||| | ||||| |||||||||| |||||||||||||| ||||||||| || |||||||||||||||| ||||||||||    
T  13856275 gggcggttctaaggcccggcgacccagggcacttgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaat 13856176  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  13856175 ccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 13856117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 44994920 - 44995079
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||     
T  44994920 gggcggttctaaggcccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 44995019  T
Q  144 ccc-tataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    ||| ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  44995020 cccttataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 44995079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 40845863 - 40846027
Alignment:
Q  38 aaccatgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttat 137  Q
    ||||| |||||||||||||||||||||||| || ||| ||||||||| || ||| ||||||||||||||||| || || |||||||||||||||| ||||    
T  40845863 aaccaggggcggttctaaggcccggcgacctcgggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaatccctatgaatttcttat 40845962  T
Q  138 ataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    ||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  40845963 ataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 40846027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 36539808 - 36539631
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||| ||||| | || ||| |||||||||||| || | ||||||| |||||||||||||| |||||||||| ||||| ||||||||      
T  36539808 gggcggttctaaggcctggcgagctcgggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaatccctataaatttcttatataatc 36539709  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||||||| |||||||||| |||||||||||||||| |||||||||| ||||||||||| ||||||| ||||    
T  36539708 ccctataaattgggcaatttctttaaattttttgattatttgtttgcaatttcctatgtaaacccctataaatgtgtt 36539631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 43347288 - 43347453
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||| |||||||| |  | ||| | | |||||||| |  |||||||||||||||||||||||| |||| ||| ||||||| |||||||||     
T  43347288 gggcggttctaagacccggcgagcttgggcagttgtccgggctccgacccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaac 43347387  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaaccct 209  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43347388 ccctacaaattgggcaatttctttagattttttgattatttgcttgcaatttcttatgtaaaccct 43347453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 5391633 - 5391475
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||| ||||||||||||| | |||||||||||||||| | ||||| |||||  ||||||||| || |||||||||||||||| |||||||||     
T  5391633 gggcggttctatggcccggcgaccctgggcactcgcccgggctccgcgccaattttttgacaatttcttgtgtaaatccctatgaatttcttatataaac 5391534  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  5391533 ccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 5391475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 10839367 - 10839494
Alignment:
Q  79 cccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttga 178  Q
    ||||||||| |  |||||||||||||||||||||||| ||||  || ||||||| ||||||||| | |||||||||||| ||||||||||||||||||||    
T  10839367 cccgggctccgacccaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttagattttttga 10839466  T
Q  179 ttatttgcttgcaatttcttatgtaaac 206  Q
    ||||||||||||||||||||||||||||    
T  10839467 ttatttgcttgcaatttcttatgtaaac 10839494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 8926909 - 8926765
Alignment:
Q  78 gcccgggctctgggccaaatttttt-gcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagatttttt 176  Q
    ||||||||||||| |||| |||||| |||||||| |||| |||| ||| ||||||| | ||||||| ||||||||||| || ||||||| ||||||||||    
T  8926909 gcccgggctctggcccaattttttttgcaatttcatatgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagatttttt 8926810  T
Q  177 gattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||    
T  8926809 gattatttgcttgcaatttcttatgttaacccttataaatgtgtt 8926765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 3178841 - 3178703
Alignment:
Q  82 gggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgatta 181  Q
    |||||| || ||||||||||| ||||||||| || |||||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||  |||    
T  3178841 gggctccggcccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttag-tttttttttta 3178743  T
Q  182 tttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||||||| ||||||||| | ||||||||||||    
T  3178742 tttgcttgcaatttcgtatgtaaactcctataaatatgtt 3178703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 32352995 - 32352865
Alignment:
Q  72 gcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagat 171  Q
    |||||||||||||||| ||||||| |||||||||||||||| |  |||||||||||||||| ||||||||| ||||||||||| || |||||||||| ||    
T  32352995 gcactcgcccgggctccgggccaatttttttgcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaatttctttacat 32352896  T
Q  172 tttttgattatttgcttgcaatttcttatgta 203  Q
    ||||| ||||||||||| ||||||||||||||    
T  32352895 ttttt-attatttgcttacaatttcttatgta 32352865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 54547027 - 54546901
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttc 196  Q
    ||||||||||||||||| | |||| ||| ||||||| ||||||||| |||||||||||||  ||||||||||||| |||||||||||||||| |||||||    
T  54547027 ttttttgcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaatttctttagat-ttttgattatttgcttacaatttc 54546929  T
Q  197 ttatgtaaacccttataaatatgttaca 224  Q
    ||||||||| || ||||||| |||||||    
T  54546928 ttatgtaaatccctataaatgtgttaca 54546901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 19649360 - 19649502
Alignment:
Q  80 ccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagatttttt-ga 178  Q
    |||||||| ||  ||| ||||||| ||||||||||| ||||| |||||||||| ||||||||| || ||||||||||  |||||||||||||||||| ||    
T  19649360 ccgggctccggcacaacttttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttagattttttgga 19649459  T
Q  179 ttatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||||||||||||||||||  || ||||||| ||||    
T  19649460 ttatttgcttgcaatttcttatgtaattccctataaatgtgtt 19649502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 23467519 - 23467604
Alignment:
Q  117 aaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  23467519 aaatccctatgaatttcttatataaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 23467604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 22845362 - 22845488
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    |||||||||||||||||||||||| |||| |   | ||||| ||||||||| ||||||||||| |  |||||||||||||||||| ||||||||||||||    
T  22845362 ccaaattttttgcaatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttctttagatttttt-attatttgcttgca 22845460  T
Q  192 atttcttatgtaaacccttataaatatgt 220  Q
    |||| |||| ||||||| |||||||||||    
T  22845461 attttttatataaaccc-tataaatatgt 22845488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 33103866 - 33103743
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttc 196  Q
    ||||||||||||||||||| |||| ||  | ||||| |||||||| ||||||||||||||  ||||| |||| ||||||| |||||||||||| ||||||    
T  33103866 ttttttgcaatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataatttatttaaatttttt-attatttgcttgtaatttc 33103768  T
Q  197 ttatgtaaacccttataaatatgtt 221  Q
    ||||||||| |||||||||| ||||    
T  33103767 ttatgtaaatccttataaatgtgtt 33103743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 48206968 - 48206853
Alignment:
Q  105 aatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaa 204  Q
    ||||| ||||| |||| ||| |||||| || ||||||| ||||||||||| |  ||||| |||||||||||||||||||| |||||||||||||||||||    
T  48206968 aattttttatgtaaattcctctgaattctt-atataaacccctataaatttgacaatttttttagattttttgattatttacttgcaatttcttatgtaa 48206870  T
Q  205 acccttataaatatgtt 221  Q
    || ||||||||| ||||    
T  48206869 acacttataaatgtgtt 48206853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 47889824 - 47889736
Alignment:
Q  122 cctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttg-caatttcttatgtaaaccct 209  Q
    ||||||||||| |||||||||| ||||||||||||| |||||||||| ||||||| ||||||| |||| |||||||| |||||||||||    
T  47889824 cctatgaatttcttatataaattcctataaattgggcaatttctttaaatttttttattatttacttgacaatttctaatgtaaaccct 47889736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 19644327 - 19644461
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattg-ggaaatttctttagatttttt-gattatttgcttg 189  Q
    |||| ||||||| ||||| ||||| ||||  ||||||||||||||||||||||  |||||||||   || ||| |||||||||||| ||||||||| |||    
T  19644327 ccaatttttttgtaattttttatgtaaattgctatgaattttttatataaatctttataaattgaacaattttttttagattttttggattatttgattg 19644426  T
Q  190 caatttcttatgtaaacccttataaatatgttaca 224  Q
    |||||||||||||||  || ||||||| |||||||    
T  19644427 caatttcttatgtaattccctataaatgtgttaca 19644461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 46685784 - 46685903
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    |||||||||||||| ||||||||| |||||||  | ||||| |||||||||  |||||||||| |  |||||||||| ||||||| |||||||| |||||    
T  46685784 ccaaattttttgca-tttcttatgtaaatccccctaaatttcttatataaactcctataaatttgacaatttctttatatttttt-attatttgtttgca 46685881  T
Q  192 atttcttatgtaaacccttata 213  Q
    |||||||||| |||||| ||||    
T  46685882 atttcttatgcaaacccctata 46685903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 51336339 - 51336224
Alignment:
Q  90 ggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttg 189  Q
    |||||| ||||||||||||| ||||| |||| |   |||||||||||||||||||  |||||||| |  |||||||||| ||||||| ||||||| ||||    
T  51336339 ggccaatttttttgcaattttttatgtaaattctcctgaattttttatataaatctttataaatttgacaatttctttaaatttttt-attatttacttg 51336241  T
Q  190 caatttcttatgtaaac 206  Q
    |||||||||| ||||||    
T  51336240 caatttcttacgtaaac 51336224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 6280361 - 6280487
Alignment:
Q  94 aaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaat 193  Q
    ||||||| |||||||||||||| ||||  |  ||||||| ||||||||| | ||||||||| |  ||||| |||||| |||||||| |||||||||| ||    
T  6280361 aaattttgtgcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaatttatttaga-tttttgataatttgcttgccat 6280459  T
Q  194 ttcttatgtaaacccttataaatatgtt 221  Q
    || ||||||||||| |||||||| ||||    
T  6280460 tttttatgtaaacctttataaatgtgtt 6280487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 27642836 - 27642723
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||| ||||||||||||||||| |  | ||| | ||| ||||||  |  ||||||||||||||||||||||| |||||| | ||||||| ||||||||||    
T  27642836 gggcagttctaaggcccggcgagcttgggcagttgcctgggctcctgctcaaattttttgcaatttcttatgtaaatccttttgaatttcttatataaat 27642737  T
Q  144 ccctataaattggg 157  Q
    || |||||||||||    
T  27642736 ccttataaattggg 27642723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 791906 - 791831
Alignment:
Q  128 aattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaac 206  Q
    ||||| |||||||||| ||||||||||| | |||||||||| ||||||||||||||   ||| ||||||||||||||||    
T  791906 aatttcttatataaattcctataaattgcgtaatttctttatattttttgattatt---ttgtaatttcttatgtaaac 791831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 36826020 - 36826083
Alignment:
Q  158 aaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||| ||||||| || ||||||||||| |||||||||||||||| ||||||| ||||    
T  36826020 aaatttctttaaattttttaatgatttgcttgcagtttcttatgtaaacccctataaatgtgtt 36826083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 47315142 - 47315233
Alignment:
Q  130 ttttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||| |||||||| | ||| ||||||   |||||| |||  ||||||||||||||  |||||||||||||||||||| | ||||||||||||    
T  47315142 ttttatatataaacctctaaaaattgaacaatttccttaatttttttgattatttatttgcaatttcttatgtaaactcctataaatatgtt 47315233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 50663257 - 50663177
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttg 177  Q
    ||||||||||||||||||| | || ||| | ||||| ||||||||| || |||||||||  ||||||||||  ||||||||    
T  50663257 ttttttgcaatttcttatgtagattcctctaaatttcttatataaacccttataaattgaaaaatttctttgtattttttg 50663177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 34707292 - 34707134
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||     
T  34707292 gggcggttctaagacccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 34707193  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  34707192 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 34707134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 10576854 - 10576691
Alignment:
Q  39 accatgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttata 138  Q
    |||| |||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||    
T  10576854 accaggggcggttctaaggtccggcgaccccgggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttata 10576755  T
Q  139 taaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||| |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  10576754 taaacccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 10576691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 34259694 - 34259536
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||||| || |||||||||||||||| |||||||||     
T  34259694 gggcggttctaaggcccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 34259595  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  34259594 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 34259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 44164695 - 44164853
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||  |||||||||| |||||||||     
T  44164695 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaac 44164794  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  44164795 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 44164853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 29238095 - 29238253
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||||||||||||| || |||||||||||||||| |||||||||     
T  29238095 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29238194  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    ||||| ||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  29238195 ccctaaaaattggaaaatttctttacatttttt-attatttgcttacaatttcttatgta 29238253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 29981065 - 29981223
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||| |||||||||| || |||||||||||||||| ||||||| | |||||||||||||| || |||||||||||||||| |||||||||     
T  29981065 gggcggttctaagacccggcgacctcgggcactcgcccgggctccgggccaattcttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29981164  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
      |||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  29981165 ttctataaattggacaatttctttatatttttt-attatttgcttgcaatttcttatgta 29981223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 19334509 - 19334678
Alignment:
Q  41 catgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatata 140  Q
    |||||||||||||| |||||||||||||||  ||||| ||| || |  || |||| ||||||||||||||||||| |||| ||||||||||| |||||||    
T  19334509 catgggcggttctatggcccggcgaccccggtcactcccccaggtttcggcccaatttttttgcaatttcttatgtaaatacctatgaatttcttatata 19334608  T
Q  141 aatccctataaattgggaaatttctttaga-ttttttgattatttgcttgcaatttcttatgtaaaccct 209  Q
    || |||||||||||||  |||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  19334609 aacccctataaattggacaatttctttagattttttttattatttgcttgcaatttcttatataaaccct 19334678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 221
Target Start/End: Complemental strand, 10334360 - 10334177
Alignment:
Q  38 aaccatgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttat 137  Q
    ||||||||||||||  ||||| ||||||  |||   | ||||||||||||||| |||| ||||||||||||||||||| |||| ||| ||||||| ||||    
T  10334360 aaccatgggcggtttcaaggctcggcgagtccggatagtcgcccgggctctggcccaatttttttgcaatttcttatgtaaattcctctgaatttcttat 10334261  T
Q  138 ataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||  | ||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||| ||||||| ||||    
T  10334260 ataaactcttataaattgggcaatttctttagatatttttaatatttgcttgcaatttcttatgtaaacccctataaatgtgtt 10334177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 29555891 - 29556049
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||| ||||| ||||||| | |||||||||||| ||| ||||||| |||||  ||||||||| || |||| ||||||||||| |||||||||     
T  29555891 gggcggttctatggcccagcgaccctgggcactcgcccggcctccgggccaattttttgacaatttcttgtgtaaattcctatgaatttcttatataaac 29555990  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  29555991 ccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 29556049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 24320426 - 24320549
Alignment:
Q  79 cccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttga 178  Q
    ||||||||| |||||||||||||||||||||||| || |||| |||| |||||| ||||||||| |||||||||||||| |||||||||| ||||||| |    
T  24320426 cccgggctccgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaatttctttacatttttt-a 24320524  T
Q  179 ttatttgcttgcaatttcttatgta 203  Q
    |||||||||||||||||||||||||    
T  24320525 ttatttgcttgcaatttcttatgta 24320549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 33057644 - 33057770
Alignment:
Q  79 cccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttga 178  Q
    ||||||||| || |||| |||||| |||||||||||| |||||||||||||||| ||||||||  ||||||||||||   |||||||||||||||||| |    
T  33057644 cccgggctccggcccaattttttttcaatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttagattttttta 33057743  T
Q  179 ttatttgcttgcaatttcttatgtaaa 205  Q
    |||||||||||||||||||||||||||    
T  33057744 ttatttgcttgcaatttcttatgtaaa 33057770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 17303101 - 17303244
Alignment:
Q  79 cccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttaga-ttttttg 177  Q
    ||||||||| |  |||| ||||||||||||||||||| |||| ||||||||||| ||||||||| || | ||||||||| |||||||||||| ||||||     
T  17303101 cccgggctccgacccaatttttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagatttttttt 17303200  T
Q  178 attatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||    
T  17303201 attatttgcttgcaatttcttatgtaaaccactataaatgtgtt 17303244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 32876527 - 32876640
Alignment:
Q  89 gggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgctt 188  Q
    |||||||||||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||  |||||||||| ||||||| |||||||||||    
T  32876527 gggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttctttacatttttt-attatttgctt 32876625  T
Q  189 gcaatttcttatgta 203  Q
    |||||||||||||||    
T  32876626 gcaatttcttatgta 32876640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 9770830 - 9770682
Alignment:
Q  50 ttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaatttttt-gcaatttcttatgcaaatccctatgaattttttatataaatcccta 148  Q
    |||||||||||||||| || | ||||| |||||| ||  || |||| |||||| ||||||||||||| |||||    ||||||| ||||||||| | |||    
T  9770830 ttctaaggcccggcgagcctgggcacttgcccggacttcggcccaattttttttgcaatttcttatgtaaatcatcctgaatttcttatataaaccacta 9770731  T
Q  149 taaattgggaaatttctttagattttttgattatttgcttgcaatttctt 198  Q
    | ||||||  |||||||||||| |||| ||||||||||||||||||||||    
T  9770730 tgaattggacaatttctttagactttt-gattatttgcttgcaatttctt 9770682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 221
Target Start/End: Original strand, 26284383 - 26284506
Alignment:
Q  97 ttttttgcaatttcttatgcaaa-tccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaattt 195  Q
    ||||||||||||||||||| ||| ||||| ||||||| ||||| || |   ||||||||||  |||||||||||||||||| ||||||| ||||||||||    
T  26284383 ttttttgcaatttcttatgtaaaatccctctgaatttcttataaaactag-tataaattggacaatttctttagatttttt-attattttcttgcaattt 26284480  T
Q  196 cttatgtaaacccttataaatatgtt 221  Q
    ||| ||||||||| ||||||| ||||    
T  26284481 cttttgtaaacccctataaatgtgtt 26284506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 15017896 - 15017817
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagatttttt 176  Q
    ||||||||||||||||||| |||| ||| ||||||| |||||||||  | ||||||||||  ||||||||||||||||||    
T  15017896 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttagatttttt 15017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 2702287 - 2702349
Alignment:
Q  159 aatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||| |||||||||||| ||||||| | ||||||||||||||||||||| || |||||||||    
T  2702287 aatttttttagatttttttattattttcatgcaatttcttatgtaaacccataaaaatatgtt 2702349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 43342533 - 43342420
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttc 196  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||||| ||||     ||||| ||||||||||||||||||     |||  ||||||||||    
T  43342533 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaa-ccct-----ttgggcaatttctttagatttttt-----ttttattgcaatttc 43342445  T
Q  197 ttatgtaaacccttataaatatgtt 221  Q
    |||||||||| | ||||||| ||||    
T  43342444 ttatgtaaacacctataaatgtgtt 43342420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 2702188 - 2702254
Alignment:
Q  48 ggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttat 114  Q
    |||||||| ||||||||| |||| ||||| |||||||||| || |||| ||||||||||||| ||||    
T  2702188 ggttctaatgcccggcgagcccgtgcacttgcccgggctccggcccaagttttttgcaattttttat 2702254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 23032192 - 23032238
Alignment:
Q  159 aatttctttagattttttgattatttgcttgcaatttcttatgtaaa 205  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  23032192 aatttctttagattttttgattatttgcttgtaattttttatctaaa 23032238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 41853226 - 41853132
Alignment:
Q  128 aattttttatataaatccctataaattgggaaatttctttagatttttt-gattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||| |||| ||||| ||||||| ||||  ||||| |||||||||||| |||||||||||||||||||  ||| ||||||  ||||||| ||||    
T  41853226 aatttcttatttaaattcctataagttggacaatttttttagatttttttgattatttgcttgcaattttctatataaacctctataaatgtgtt 41853132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 41853259 - 41853217
Alignment:
Q  72 gcactcgcccgggctctgggccaaattttttgcaatttcttat 114  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  41853259 gcactcgcccgggctccggcccaaattttttgcaatttcttat 41853217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 25128163 - 25128204
Alignment:
Q  180 tatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  25128163 tatttgcatgcaatttcttatgtaaacccatataaatatgtt 25128204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 23032104 - 23032164
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaa 152  Q
    ||||| ||||| |||||| ||||| |||||||| |||| |||||||||||| | |||||||    
T  23032104 ccaaaatttttacaattttttatgtaaatccctctgaaatttttatataaacctctataaa 23032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 35806970 - 35806806
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| || ||||| |||||||||| |||||||||     
T  35806970 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 35806871  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaaccct 209  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  35806870 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacaccct 35806806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 22324772 - 22324614
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |||||||| || |||||||||||||||| |||||||||     
T  22324772 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaac 22324673  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  22324672 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 22324614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 42072604 - 42072443
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| || |||||||||||||||| |||||||||     
T  42072604 gggcggttctatggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42072505  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaac 206  Q
    |||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  42072504 ccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgtaaac 42072443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 26021573 - 26021413
Alignment:
Q  44 gggcggttctaaggccc-ggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaa 142  Q
    ||||||||||||||||| || ||||||| ||||| |||||||||| | |||||||||||||||||||||| || |||||||||||||||| |||||||||    
T  26021573 gggcggttctaaggccccggtgaccccgggcactagcccgggctccgtgccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaa 26021474  T
Q  143 tccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
     |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  26021473 cccctataaattgggtaatttctttacatttttttattatttgcttgcaatttcttatgta 26021413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 21525534 - 21525376
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||| ||| |||||||||||||||||||| || |||||||||||||||| |||||||||     
T  21525534 gggcggttctaaggcccggtgaccccgggcactcgccagggctccgggtcaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 21525435  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  21525434 ccctataaattggacaatttctttacatttttt-attatttgcttgcaatttcttatgta 21525376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 33934321 - 33934479
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| || |||| ||||||||||| |||||||||     
T  33934321 gggcggttttaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataaac 33934420  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||    
T  33934421 ccctataaattgggcaatttttttatatttttt-attatttgcttgcaatttcttatgta 33934479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 42014048 - 42013890
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| ||||| | ||||| |  |||||||||||||||||||||||| || |||||||||||||||| |||||||||     
T  42014048 gggcggttctaaggcccggcgaccccgggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42013949  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
     ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  42013948 tcctataaattgggcaatttctttatatttttt-attatttgcttgcaatttcttatgta 42013890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 10112223 - 10112046
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||||||||| || |  || | |||||||||||||  ||| ||||||||||||| ||||| |||| ||| | ||||| |||||||||     
T  10112223 gggcggttctaaggcccggcgagcctggacagttgcccgggctctggctcaatttttttgcaattttttatgtaaattcctcttaatttcttatataaac 10112124  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
     | ||||||||||  |||||||||  |||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  10112123 tcttataaattggacaatttcttttaattttttgattatttatttgcaatttcttatgtaaacccctataaatatgtt 10112046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 24065410 - 24065288
Alignment:
Q  83 ggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattat 182  Q
    ||||||||||||||  ||||||||||||| ||  ||||| |||||||||| |||||||||  ||||||||||||| ||||||||||| |||||| |||||    
T  24065410 ggctctgggccaaaacttttgcaatttctcatataaatctctatgaatttcttatataaactcctataaattgggcaatttctttagctttttt-attat 24065312  T
Q  183 ttgcttgcaatttcttatgtaaac 206  Q
    ||||||||||||||||||||||||    
T  24065311 ttgcttgcaatttcttatgtaaac 24065288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 16523270 - 16523155
Alignment:
Q  56 ggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattg 155  Q
    ||||||||||| |||  ||||||| ||||||| || ||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  16523270 ggcccggcgacgccggacactcgctcgggctccggcccaaattttttacaatttcatatgtaaatccctatgaatttcttatataaatccctataaattg 16523171  T
Q  156 ggaaatttctttagat 171  Q
    || || ||||||||||    
T  16523170 ggcaacttctttagat 16523155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 19334911 - 19334783
Alignment:
Q  92 ccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgca 191  Q
    |||||||||||||||||||||||  |||| | ||||||||||||||||||| | ||||||||| |  |||||||||| ||| ||| ||||||||||| ||    
T  19334911 ccaaattttttgcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaatttctttaaattgttttattatttgcttaca 19334812  T
Q  192 atttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||| ||||| ||||||||||||    
T  19334811 atttcttatgt-aacccctataaatatgtt 19334783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 43282852 - 43282964
Alignment:
Q  93 caaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaa 192  Q
    |||||||||| |||||||||||| |||| | | ||||||| |||||||||||||||||||||||| |||||| |||||  |||| ||||||||||||| |    
T  43282852 caaattttttacaatttcttatgtaaattcttctgaatttattatataaatccctataaattgggtaatttcattagaaatttttattatttgcttgcta 43282951  T
Q  193 tttcttatgtaaa 205  Q
    |||||||||||||    
T  43282952 tttcttatgtaaa 43282964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 34697427 - 34697518
Alignment:
Q  130 ttttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||||||||||| |||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||  ||||||||||||||    
T  34697427 ttttttatataaatctctataaattgagaaatttctttaattttttttattatttgcttgcaatttcttatgtaaattcttataaatatgtt 34697518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 21488246 - 21488082
Alignment:
Q  40 ccatgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatat 139  Q
    ||||||||||||   ||||| |||||||||| ||||||| ||||||||||  | |||  ||||  |||||||| || |||| ||| ||||||| |||||     
T  21488246 ccatgggcggtttctaggcctggcgaccccgggcactcgtccgggctctgtcctaaagcttttataatttcttgtgtaaattcctttgaatttcttatag 21488147  T
Q  140 aaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaa 205  Q
    ||| ||| |||||||||  |||||||||||||||||| |||| |||||||||||||||||||||||    
T  21488146 aaaccccgataaattggacaatttctttagatttttttatta-ttgcttgcaatttcttatgtaaa 21488082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 16818921 - 16819104
Alignment:
Q  40 ccatgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatat 139  Q
    |||||| |||||  ||| |||||||| |||| | | ||||||  ||||||| ||||||||||||||||||||| || ||||| |  ||||||| ||||||    
T  16818921 ccatggacggtttcaagacccggcgagcccgggtagtcgcccaagctctggcccaaattttttgcaatttcttttgtaaatctccttgaatttcttatat 16819020  T
Q  140 aaatccctataaattgggaaatttcttta--gattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||| |||||||||||||| ||||||| ||   | | ||| |||||||||||||||||| |||| ||||||| ||||||| ||||    
T  16819021 aaacccctataaattgggtaatttctctatctagtattttattatttgcttgcaattttttatataaacccctataaatgtgtt 16819104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 16591377 - 16591449
Alignment:
Q  94 aaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctt 166  Q
    |||||||||||||||||||||| ||||  ||| |||||| ||||||||||| |||||||||||| ||||||||    
T  16591377 aaattttttgcaatttcttatgtaaatttctaagaatttcttatataaatcactataaattgggcaatttctt 16591449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 2271318 - 2271239
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagatttttt 176  Q
    ||||||||||||||||||| |||||    ||||||| ||||||||| ||||||| ||| || ||||||||||||||||||    
T  2271318 ttttttgcaatttcttatgtaaatcatgctgaatttcttatataaacccctatatattaggtaatttctttagatttttt 2271239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 2824185 - 2824295
Alignment:
Q  95 aattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattggg-aaatttctttagattttttgattatttgcttgcaat 193  Q
    ||||||||||||||| ||||| |||| ||| | ||||| ||||||||  || ||||||||||| |||||| |||  ||| ||||   |||||||||||||    
T  2824185 aattttttgcaattttttatgtaaattcctctaaatttcttatataaccccttataaattgggcaaattttttt--attatttgcaaatttgcttgcaat 2824282  T
Q  194 ttcttatgtaaac 206  Q
    |||||||||||||    
T  2824283 ttcttatgtaaac 2824295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 23756599 - 23756547
Alignment:
Q  159 aatttctttagattttttgattatttgcttgc--aatttcttatgtaaaccct 209  Q
    |||||||||| |||||||||||||||||||||  |||||||||| ||||||||    
T  23756599 aatttctttaaattttttgattatttgcttgcaaaatttcttatataaaccct 23756547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 16523125 - 16523069
Alignment:
Q  165 tttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    ||||||| || | |||||||||||||||||| ||||| ||||||| |||||| ||||    
T  16523125 tttagatattcttattatttgcttgcaattttttatgcaaaccctcataaatgtgtt 16523069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 16591440 - 16591472
Alignment:
Q  189 gcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||||||||||||||||||||| ||||    
T  16591440 gcaatttcttatgtaaacccttataaatgtgtt 16591472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 9231806 - 9231964
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||| || ||||| |||||||||| |||||||||     
T  9231806 gggcggttctaaggctcggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 9231905  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  9231906 ccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 9231964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 24694603 - 24694761
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||||||| |||| | |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||     
T  24694603 gggcggttctaaggcccggcaaccctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 24694702  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
     ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  24694703 tcctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 24694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 13627716 - 13627558
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||     
T  13627716 gggcggttctaaggcccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 13627617  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||||| | |||||||||| ||||||| |||||||||||| | |||||||||||    
T  13627616 ccctataaattgagcaatttctttacatttttt-attatttgcttgtactttcttatgta 13627558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 28750599 - 28750779
Alignment:
Q  41 catgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatata 140  Q
    |||||||||||||||||||||||||  | | ||| | || ||||||||||||||| ||||||||||||||||||| |||| | | ||||||| |||||||    
T  28750599 catgggcggttctaaggcccggcgagtctgggcaattgctcgggctctgggccaatttttttgcaatttcttatgtaaattcttctgaatttcttatata 28750698  T
Q  141 aatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    || |||||||||||||| ||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  28750699 aacccctataaattgggcaatttctttaatttttttgattatttgcttgtaatttcttatgtaaactcttataaatgtgtt 28750779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 14309752 - 14309908
Alignment:
Q  45 ggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatc 144  Q
    ||||||| |||||||||||||||||   |||||||||||  || |||||||||||||||||||||||| || |||||||||||||||| |||||||||||    
T  14309752 ggcggttataaggcccggcgaccccagacactcgcccggtttc-gggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaatc 14309850  T
Q  145 cctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||    
T  14309851 cctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 14309908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 13103109 - 13103242
Alignment:
Q  83 ggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattat 182  Q
    ||||||||  ||||||||||||||||| ||||| |||| ||| ||||||| ||||||||| |  ||||||||||| ||||||||||||||||||||||||    
T  13103109 ggctctggctcaaattttttgcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattat 13103208  T
Q  183 ttgcttgcaatttcttatgtaaacccttataaat 216  Q
    ||||||||||||||| |||||||| | |||||||    
T  13103209 ttgcttgcaatttctaatgtaaacacctataaat 13103242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 1727913 - 1728035
Alignment:
Q  72 gcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagat 171  Q
    |||||||||| ||||| |||||||||||||||||||||||| || |||||||||||||||| ||||||||| |||||||||||| | |||||||||| ||    
T  1727913 gcactcgcccaggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacat 1728012  T
Q  172 tttttgattatttgcttgcaattt 195  Q
    ||||| ||||||| ||||||||||    
T  1728013 ttttt-attatttccttgcaattt 1728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 34103808 - 34103685
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttc 196  Q
    ||||||| ||||| ||||| |||| ||| ||||||| ||||||||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  34103808 ttttttgtaatttattatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagatttttt-attatttgtttgcaatttc 34103710  T
Q  197 ttatgtaaacccttataaatatgtt 221  Q
    ||||||||||| || ||||| ||||    
T  34103709 ttatgtaaacctttgtaaatgtgtt 34103685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 11212765 - 11212687
Alignment:
Q  126 tgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaa 205  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagat-ttttaattatttgcttgtaatttcttatgtaaa 11212687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 11279634 - 11279556
Alignment:
Q  126 tgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttcttatgtaaa 205  Q
    |||||||||||||||||| | |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  11279634 tgaattttttatataaattcttataaatttggtaatttctttagatttttt-attatttgcttgcaatttcttatgtaaa 11279556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 27863828 - 27863714
Alignment:
Q  92 ccaaattttttgcaattt-cttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgc 190  Q
    ||||| |||||||||||| |||||| ||||  || ||||||| ||||||||| || ||||||||||  |||||||||||||||||| |||||||| ||||    
T  27863828 ccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttagatttttt-attatttgtttgc 27863730  T
Q  191 aatttcttatgtaaac 206  Q
    ||||||||||||||||    
T  27863729 aatttcttatgtaaac 27863714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 24500765 - 24500829
Alignment:
Q  157 gaaatttctttagattttttgattatttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||    
T  24500765 gaaatttctttagatttttttattatttgcttgcaatttcatatgtaaacccttataaatgtgtt 24500829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 11084765 - 11084668
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaa 142  Q
    ||||||||||||||||||| ||||||| ||| ||||||||| || | ||||| |||||||||||||||| || |||| ||||||||||| |||||||||    
T  11084765 gggcggttctaaggcccggtgaccccgggca-tcgcccgggttccgagccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaa 11084668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 24497527 - 24497646
Alignment:
Q  45 ggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaatc 144  Q
    |||||||||||||| |||||| || | ||| | || | ||||| || |||||||||||||||||| || || |||| ||| ||||||| ||||||||| |    
T  24497527 ggcggttctaaggctcggcgagcctgggcagttgcacaggctccggcccaaattttttgcaattttttgtgtaaattcctctgaatttcttatataaacc 24497626  T
Q  145 cctataaattgggaaatttc 164  Q
    ||||||||||||| ||||||    
T  24497627 cctataaattgggcaatttc 24497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 34383361 - 34383438
Alignment:
Q  42 atgggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaa 119  Q
    ||||||||||||| |||| |||||||||| | | |||||||||||| || | |||||||| |||||||||||||||||    
T  34383361 atgggcggttctatggcctggcgaccccgggtattcgcccgggctccggcctaaatttttcgcaatttcttatgcaaa 34383438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 7517077 - 7517031
Alignment:
Q  159 aatttctttagattttttgattatttgcttgcaatttcttatgtaaa 205  Q
    ||||| |||||||||||| || ||||||||||||||||||| |||||    
T  7517077 aatttttttagatttttttatcatttgcttgcaatttcttaagtaaa 7517031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 11084661 - 11084628
Alignment:
Q  170 attttttgattatttgcttgcaatttcttatgta 203  Q
    ||||||| ||||||||||||||||||||||||||    
T  11084661 atttttttattatttgcttgcaatttcttatgta 11084628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 54695 - 54542
Alignment:
Q  44 gggcggttctaaggcccggcgaccccgagcactcgcccgggctctgggccaaattttttgcaatttcttatgcaaatccctatgaattttttatataaat 143  Q
    ||||||||||||||||||||||||||| ||| ||||||||  || ||||||| ||||||||||||| || || |||| ||||||||||||||||||||||    
T  54695 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaat 54596  T
Q  144 ccctataaattgggaaatttctttagattttttgattatttgcttgcaatttctt 198  Q
    |||||||||||||  |||||||||| ||||||| |||||||||||||||||||||    
T  54595 ccctataaattggacaatttctttacatttttt-attatttgcttgcaatttctt 54542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 54549 - 54506
Alignment:
Q  159 aatttctttagattttttgattatttgcttgcaatttcttatgta 203  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  54549 aatttctttacatttttt-attatttgcttgcaatttcttatgta 54506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 34457 - 34575
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttgattatttgcttgcaatttc 196  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||| |||||||||||  | |||||||||||||||||||||||||||| |||||||    
T  34457 ttttttgcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagattttttgattatttgcttacaatttc 34556  T
Q  197 ttatgtaaacccttataaa 215  Q
    |||||||||| | ||||||    
T  34557 ttatgtaaactcctataaa 34575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 20836 - 20916
Alignment:
Q  97 ttttttgcaatttcttatgcaaatccctatgaattttttatataaatccctataaattgggaaatttctttagattttttg 177  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||||| | |||||||||||  ||||| |||||||||||||    
T  20836 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaatttttttagattttttg 20916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 85550 - 85510
Alignment:
Q  181 atttgcttgcaatttcttatgtaaacccttataaatatgtt 221  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  85550 atttgcttgcaatttcttatgtaaacctctataaatatgtt 85510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 85592 - 85552
Alignment:
Q  128 aattttttatataaatccctataaattgggaaatttcttta 168  Q
    ||||||||||| |||||||||||||||||  ||||||||||    
T  85592 aattttttataaaaatccctataaattggacaatttcttta 85552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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