View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13359_low_15 (Length: 246)

Name: NF13359_low_15
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13359_low_15
NF13359_low_15
[»] chr2 (7 HSPs)
chr2 (1-224)||(34461103-34461312)
chr2 (150-227)||(34475018-34475095)
chr2 (155-228)||(34486959-34487032)
chr2 (150-228)||(34450489-34450567)
chr2 (1-78)||(34486432-34486509)
chr2 (1-78)||(34449730-34449807)
chr2 (1-69)||(34474781-34474847)
[»] chr8 (2 HSPs)
chr8 (150-228)||(1594621-1594699)
chr8 (1-78)||(1594303-1594380)
[»] chr4 (1 HSPs)
chr4 (17-76)||(6130362-6130421)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34461103 - 34461312
Alignment:
Q  1 aaagtaagcctcaaccactctatcccttgcataagggacatttgttacaaagtctgattttttccaccatctgcaatacaattcatatcataagaattta 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34461103 aaagtaagcctcaaccactctatcccttgcataagggacttttgttacaaagtctgattttttccaccatctgcaatacaattcatatcataagaattta 34461202  T
Q  101 tcaagctattgcaaccctaataaaagtttcccaaacggtagaagttattcttacttggtgatactgccgatttctttttgatgcattttttgtagcatgt 200  Q
    ||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34461203 tcaagc--------------taaaagtttcccaaacggtagaagttattcttacttggtgatactgccgatttctttttgatgcattttttgtagcatgt 34461288  T
Q  201 tgtaatctaattttgcaaagttta 224  Q
    ||||||||||||||||||||||||    
T  34461289 tgtaatctaattttgcaaagttta 34461312  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 34475018 - 34475095
Alignment:
Q  150 cttacttggtgatactgccgatttctttttgatgcattttttgtagcatgttgtaatctaattttgcaaagtttagaa 227  Q
    ||||||||||||||||| | | |||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||    
T  34475018 cttacttggtgatactggcaagttctttttgatgcattttctgcagcatattgaaatctaattttgcaaagtttagaa 34475095  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 34486959 - 34487032
Alignment:
Q  155 ttggtgatactgccgatttctttttgatgcattttttgtagcatgttgtaatctaattttgcaaagtttagaag 228  Q
    |||||||||||||||| |||||||| ||||||||| || | ||||||| |||||||||||||||||||||||||    
T  34486959 ttggtgatactgccgagttcttttttatgcattttctgcaacatgttgaaatctaattttgcaaagtttagaag 34487032  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 34450489 - 34450567
Alignment:
Q  150 cttacttggtgatactgccgatttctttttgatgcattttttgtagcatgttgtaatctaattttgcaaagtttagaag 228  Q
    ||||||||||||| ||||||||||| |||||||||||||| || | | ||||| |||||||||| ||||||||||||||    
T  34450489 cttacttggtgatgctgccgatttcattttgatgcattttctgcaccgtgttgaaatctaatttggcaaagtttagaag 34450567  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 34486432 - 34486509
Alignment:
Q  1 aaagtaagcctcaaccactctatcccttgcataagggacatttgttacaaagtctgattttttccaccatctgcaata 78  Q
    ||||||||| |||||||||||||||||| |||||||||| | |||  ||||||||| |||||||||||| ||| ||||    
T  34486432 aaagtaagcttcaaccactctatcccttacataagggacttctgtcgcaaagtctgtttttttccaccacctgtaata 34486509  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 34449730 - 34449807
Alignment:
Q  1 aaagtaagcctcaaccactctatcccttgcataagggacatttgttacaaagtctgattttttccaccatctgcaata 78  Q
    ||||||||||||| |||||||||||||||| || ||||| |||||| |||| ||||| | ||||||||| || |||||    
T  34449730 aaagtaagcctcagccactctatcccttgcgtatgggacgtttgttgcaaattctgagtctttccaccacctacaata 34449807  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34474781 - 34474847
Alignment:
Q  1 aaagtaagcctcaaccactctatcccttgcataagggacatttgttacaaagtctgattttttccacca 69  Q
    ||||||||| ||||  ||||||||||||||||||||||| ||| || |||||||||| |||||||||||    
T  34474781 aaagtaagcttcaa--actctatcccttgcataagggacctttcttgcaaagtctgactttttccacca 34474847  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 1594621 - 1594699
Alignment:
Q  150 cttacttggtgatactgccgatttctttttgatgcattttttgtagcatgttgtaatctaattttgcaaagtttagaag 228  Q
    |||||||||||||| || | | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1594621 cttacttggtgatattggcaagttctttttgatgcattttctgtagcatgttgaaatctaattttgcaaagtttagaag 1594699  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 1594303 - 1594380
Alignment:
Q  1 aaagtaagcctcaaccactctatcccttgcataagggacatttgttacaaagtctgattttttccaccatctgcaata 78  Q
    ||||||||||||||||||||||||||||||||||||||| |||||   |||||| |||| ||||||||| || |||||    
T  1594303 aaagtaagcctcaaccactctatcccttgcataagggacctttgtcggaaagtcagattctttccaccacctacaata 1594380  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 6130421 - 6130362
Alignment:
Q  17 actctatcccttgcataagggacatttgttacaaagtctgattttttccaccatctgcaa 76  Q
    |||||||||||||||||||| || |||||| |||||||||||| ||||||||| ||||||    
T  6130421 actctatcccttgcataaggaacttttgttccaaagtctgattctttccaccacctgcaa 6130362  T

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