View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13359_low_17 (Length: 235)
Name: NF13359_low_17
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13359_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 26914471 - 26914671
Alignment:
| Q |
20 |
attttaactgtctttggcgagttaaacgaaagacctacaacagcataagagtgtcacgtcataagaaaacgcttcacagaagacattgacattctaccat |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26914471 |
attttaactgcctttggcgagttaaacgaaagacctacaacagcataagagtgtcacgtcataagaaaacgcttcacagaagacattgacattctaccat |
26914570 |
T |
|
| Q |
120 |
tgcctagttataatactcacctattttaagcgagttgaccggtaagtgttgagtcacaggattttgaattaactctaaaagccttccctcattgcccttt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26914571 |
tgcctagttataatactcacctattttaagcgagttgaccggtaagtgttgagtcacaggattttgaattaactcaaaaagccttccctcattgcccttt |
26914670 |
T |
|
| Q |
220 |
g |
220 |
Q |
| |
|
| |
|
|
| T |
26914671 |
g |
26914671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 51182232 - 51182416
Alignment:
| Q |
20 |
attttaactgtctttggcgagttaaacgaaagacctacaacagcataagagtgtcacgtcataagaaaacgcttcacagaagacattgacattctaccat |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| | || | ||||||||||||||| |||||| |
|
|
| T |
51182232 |
attttaactgtctttggcgagttaaatgaaagacctacaacagcataagagtttgacgtcatcataagaat-------gaagacattgacattgtaccat |
51182324 |
T |
|
| Q |
120 |
tgcctagttataatactcacctattttaagcgagttgaccggtaagtgttgagtcacaggattttgaattaactctaaaagccttccctcattgcccttt |
219 |
Q |
| |
|
|||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
51182325 |
tgccta---------ctcaccaattttaagcgagttggcgggtaagtgttgagtcacaggattttgaattaactttaaaagctttccctcattgtccttt |
51182415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University