View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13359_low_3 (Length: 728)
Name: NF13359_low_3
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13359_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 6 - 331
Target Start/End: Original strand, 2670446 - 2670771
Alignment:
| Q |
6 |
agaagcaaaggcaatgggatttgagaaatttctcagatgggtgtgtgagaaaaacagaattggaatgtgacaaagataagttcttgcatttgaagaatgt |
105 |
Q |
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| T |
2670446 |
agaatcaaaggcaatgggatttgagaaatttctcagatgggtgtgtgagaaaaacagaattggaatgtgacaaagataagttcttgcatttgaagaatgt |
2670545 |
T |
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| Q |
106 |
gcaattgccagaaactagaagtgtgtttgtgaacaagagtatgacattgttggaatgtgaaaacaagtgccttaaagattgttcttgcactgcttatgct |
205 |
Q |
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| T |
2670546 |
gcaattgccagaaactagaagtgtgtttgtgaacaagagtatgacattgttggaatgtgaaaacaagtgccttaaagattgttcttgcactgcttatgct |
2670645 |
T |
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| Q |
206 |
aatgaagagataactaatggtgggacaggctgtgttatgtggaattatagtcttgttgatatgaggcagtttactgaagctggacaagatatttttatca |
305 |
Q |
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| T |
2670646 |
aatgaagagataactaatggtgggacaggctgtgttatgtggaattatagtcttgttgatatgaggcagtttactgaagctggacaagatatttttatca |
2670745 |
T |
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| Q |
306 |
gattagcagcttctgacgtaggcaag |
331 |
Q |
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| T |
2670746 |
gattagcagcttctgacgtaggcaag |
2670771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 403 - 714
Target Start/End: Original strand, 2670843 - 2671154
Alignment:
| Q |
403 |
ctacatggaattgttattggatcaaggtgtaaaaactttggctagttaggaattgattccttataatcagtactttaaaagattgtatgcaatggaagtt |
502 |
Q |
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| T |
2670843 |
ctacatggaattgttattggatcaaggtgtaaaaactttggctagttaggaattgattccttataatcaggactttaaaagattgtatgcaatggaaatt |
2670942 |
T |
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| Q |
503 |
gtgcgaaatcttgaatttttatgcctatcgccgcaggcttcacgcaagaagggcgtctaaggtttcctgaactagaagcatggcgcctagctcccacgta |
602 |
Q |
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| T |
2670943 |
gtgtgaaatcttgaatttttatgcctatcgccacaggcttcatgcaagaagggcgtctaaggtttcctgaactagaagcatggcgcctagctcccacgta |
2671042 |
T |
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| Q |
603 |
tagcacccaacactccttgaaacagaggcagggcgtccaatgtccagcgcccaacactgcgtttttctcattcccttgtttttatttgcatcatatactt |
702 |
Q |
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| T |
2671043 |
tagcacccaacactccttgaaacagaggcagggcacccaatgtccagcgcccaacactgcgtttttctcattcccttgtttttatttgcatcatatactt |
2671142 |
T |
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| Q |
703 |
gacgttggatct |
714 |
Q |
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| T |
2671143 |
gacgttggatct |
2671154 |
T |
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