View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13359_low_4 (Length: 615)
Name: NF13359_low_4
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13359_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 92 - 599
Target Start/End: Original strand, 7088277 - 7088784
Alignment:
| Q |
92 |
caagaaaatatatgcttgaggaaattaacaaacttcattgcacattaaacattaatcctaaacatctagcattacacaaacttgggcctgcagggtgaaa |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7088277 |
caagaaaatatatgcttgaggaaattaacaaacttcattgcacattaaacattaatcctaaacatctagcattacacaaacttgggcctgcagggtgaaa |
7088376 |
T |
|
| Q |
192 |
aatgagagttactttgtgcaccattttcttaaggaaatatgtacattttgatatcaaagaagatttcaaaggagttatcattcacaagctggttttgtgt |
291 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7088377 |
aatgacagttattttgtgcaccattttcttaaggaaatatgtacattttgatatcaaagaagatttcaaaggagttatcattcacaagctggttttgtgt |
7088476 |
T |
|
| Q |
292 |
caaagctgctcaaacagattgcaaaggcttgaaaagcggagagaggatatcgataatccatggtgaatatgtccttcccaatttttccaaattgtagtat |
391 |
Q |
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| T |
7088477 |
caaagctgctcaaacagattgcaaaggcttgaaaagcggagagaggatatcgatagtccatggtgaatatgtccttcccaatttttccaaattgtagtat |
7088576 |
T |
|
| Q |
392 |
aactttttcttgttctgcagccgaaacgttttggctaggttctgcagctgctacaagctgaaaattcttcactgaagccaccgtaacccgtcccttgaaa |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7088577 |
aactttttcttgttctgcagccgaaacgttttggctaggttctgcagctgctacaagctgaaaattcttcaccgaagccaccgtaacccgtcccttgaaa |
7088676 |
T |
|
| Q |
492 |
ttcaaacaccaacattgaagttgttcatgccatcttggtgctttgtttttcaaaatcagtggctctcttgcaaaatcagtgcaagttgagccaaattcaa |
591 |
Q |
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| T |
7088677 |
ttcaaacaccaacattgcagttgttcatgccatcttggtgctttgtttttcaaaatcagtggctctcttgcaaaatcagtgtaagttgagccaaattcaa |
7088776 |
T |
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| Q |
592 |
caacttct |
599 |
Q |
| |
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|||||||| |
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| T |
7088777 |
caacttct |
7088784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 7668032 - 7668185
Alignment:
| Q |
92 |
caagaaaatatatgcttgaggaaattaacaaacttcattgcacattaaacattaatcctaaacatctagcattacacaaacttgggcctgcagggtgaaa |
191 |
Q |
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|||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
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| T |
7668032 |
caagaaaatatatgcttgaggaaattaaaagacttcattacacattaaacattaatcctaaacagctagcattacacacacttgggactgcagggtgaaa |
7668131 |
T |
|
| Q |
192 |
aatgagagttactttgtgcaccattttcttaaggaaatatgtacattttgatat |
245 |
Q |
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| T |
7668132 |
aatgagagttattttgtgcgccattttcttaaggaaatacgtacattttgatat |
7668185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 541
Target Start/End: Original strand, 39942985 - 39943079
Alignment:
| Q |
447 |
agctgaaaattcttcactgaagccaccgtaacccgtcccttgaaattcaaacaccaacattgaagttgttcatgccatcttggtgctttgttttt |
541 |
Q |
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| T |
39942985 |
agctggaaatttttaactgaagcgactgtcacacgtccattgaagttcaaacaccagcattggagttgttcatgccacctaggagccttgttttt |
39943079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 7668237 - 7668282
Alignment:
| Q |
137 |
taaacattaatcctaaacatctagcattacacaaacttgggcctgc |
182 |
Q |
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| T |
7668237 |
taaacattaatcctaaacagctagcattacacacacttgggactgc |
7668282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 526
Target Start/End: Original strand, 7877950 - 7878207
Alignment:
| Q |
269 |
tcattcacaagctggttttgtgtcaaagctgctcaaacagattgcaaaggcttgaaaagcggagagaggatatcgataatccatggtgaatatgtccttc |
368 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||| || || ||||||||||| || || ||||| ||||| || |||||||| || ||||| || || |
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| T |
7877950 |
tcattcacatgctggttttgtatcaaagctgctcaagcatatcgcaaaggcttggaaggcagagagtggataacggtaatccatagtaaatatatctttt |
7878049 |
T |
|
| Q |
369 |
ccaatttttccaaattgtagtataactttttcttgttctgcagccgaaacgttttggctaggttctgcagctgctacaagctgaaaattcttcactgaag |
468 |
Q |
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| T |
7878050 |
ccaatctttccaaactgcaagataaccttctcttgctctgcaggaggaacattatgagatggctcaacagcagccacaagttgaaagttcttaactgaag |
7878149 |
T |
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| Q |
469 |
ccaccgtaacccgtcccttgaaattcaaacaccaacattgaagttgttcatgccatct |
526 |
Q |
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| T |
7878150 |
ccactgtaacgcggcccttgaaatttaggcaccagcattgcagctgttcatgccatct |
7878207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 1200817 - 1200914
Alignment:
| Q |
288 |
gtgtcaaagctgctcaaacagattgcaaaggcttgaaaagcggagagaggatatcgataatccatggtgaatatgtccttcccaatttttccaaattg |
385 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||| || || || | ||||||||||||||||||||| || || || ||||||| ||| || ||||| |
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| T |
1200817 |
gtgtcaaagctgcttaaacatattgcaaaagcttggaatgcagataaaggatatcgataatccatggtaaacatatctttcccaactttgccgaattg |
1200914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 387
Target Start/End: Complemental strand, 32830284 - 32830166
Alignment:
| Q |
269 |
tcattcacaagctggttttgtgtcaaagctgctcaaacagattgcaaaggcttgaaaagcggagagaggatatcgataatccatggtgaatatgtccttc |
368 |
Q |
| |
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|||||||||||| ||||| || |||||||| |||| ||||| || |||||||| || || ||||| || || || |||||||||||||| || ||| |
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| T |
32830284 |
tcattcacaagcgggtttggtatcaaagcttgtcaagcagatggcgaaggcttggaaggcagagagtgggtaagagtagtccatggtgaatatatctttc |
32830185 |
T |
|
| Q |
369 |
ccaatttttccaaattgta |
387 |
Q |
| |
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||||| |||||||| |||| |
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| T |
32830184 |
ccaatctttccaaactgta |
32830166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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