View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13359_low_5 (Length: 582)
Name: NF13359_low_5
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13359_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 16 - 560
Target Start/End: Complemental strand, 28209835 - 28209291
Alignment:
| Q |
16 |
catgacaaagttacaagtggattctagctcacaaaaaatggatgcaataataaatttgggtttaagattctcaaacaagaatgaagagttaaaacttttg |
115 |
Q |
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| T |
28209835 |
catgacaaagttacaagtggattctagctcacaaaaaatggatgcaataataaatctgggtttaagattctcaaacaagaatgaagagttaaaacttttg |
28209736 |
T |
|
| Q |
116 |
tatggtcctctttttgtagaggtaatcagtaatgatgtcttattaggtaggactaaagttaaaggattctctcaagtgcctaaaaatgacacaaatttgg |
215 |
Q |
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| T |
28209735 |
tatggtcctctttttgtagaggtaatcagtaatgatgtcttattaggtaggactaaagttaaaggattctctcaggtgcctaaaaatgacacaaatttgg |
28209636 |
T |
|
| Q |
216 |
atatgacaatgacaacaaatgatgaaaatgttaacgtatatgctacagatgatttaaaatcagacatcaaggcatatgagatggtgtttgacgtgtatgt |
315 |
Q |
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| T |
28209635 |
atatgacaatgacaacaaatgatgaaaatgttaacgtatatgctacagatgatttaaaatcagacatcaaggcatatgagatggtgtttgacgtgtatgt |
28209536 |
T |
|
| Q |
316 |
tagtggaaacattggtgtgcaaattggtagtttgcatatggtcaacgtcccttttctttcatcttgtgaacaaatcaaacaaatggatgtggattatgga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28209535 |
tagtggaaacattggtgtgcaaattggtagtttgcatatggtcaacgtcccttttctttcatcttgtgaacaaatcaaacgaatggatgtggattatgga |
28209436 |
T |
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| Q |
416 |
agaaaacccgattgtgatatcaagatgttttcttacaggtacaattataaattgcttatatatatcatgtcattttgcatgcatcaattttggccgttaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28209435 |
agaaaacccgattgtgatatcaagatgttttcttacaggtacaattataaattgcttatatatatcatgtcattttgcatgcatcaattttggccgttaa |
28209336 |
T |
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| Q |
516 |
ataatccgaaatttgcatatttagttttgattaaactaagaggct |
560 |
Q |
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| T |
28209335 |
ataatccgaaattttcatatttaattttgattaaactaagaggct |
28209291 |
T |
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