View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13359_low_6 (Length: 544)
Name: NF13359_low_6
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13359_low_6 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 35830292 - 35829783
Alignment:
| Q |
18 |
ataaagaaactaaaactaaaccatcccttcaaagaaattgcgtgtttggctaaaatcacattacctgtgacaacttccagctggaagatgttattaatct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35830292 |
ataaagaaactaaaactaaaccatcccttcaaagaaattatgtgtttggctaaaatcacattacctgtgacaatttccagctggaagatgttattaatct |
35830193 |
T |
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| Q |
118 |
gaggtccatgcctaaaagcttgtccacttattccagcattcgaaagagtgcctccaacagtgagatgaagatagtctgtccaagattttggtgacaatcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35830192 |
gaggtccatgcctaaaagcttgtccacttattccagcattcgaaagagtgcctccaacagtgagatgaagatagtctgtccaagattttggtgccaatcc |
35830093 |
T |
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| Q |
218 |
atgttttagagtctcatgcagaatgtttatccacaactcaccacctgagacatcgacaaaaggaaattcaccggtctgaattttcatttcaggactctga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35830092 |
atgttttagagtctcatgcagaatgtttatccacaactcaccacctgagacatcgacaaaaggaaattcaccggtctgaattttcatttcaggactctga |
35829993 |
T |
|
| Q |
318 |
agtgactccattttgatgactagtccttgatgtgcttgtgcttgaccttgaagggaatgtccatggcctctagcagctaccttcaactctgaatcagatc |
417 |
Q |
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| T |
35829992 |
agtgactccattttgatgactagtccttgatgtgcttgtgcttgaccttgaagggaatgtccatggcctctagcagctaccttcaactctgaatcagacc |
35829893 |
T |
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| Q |
418 |
ctttttcaaaaatatgttttacggtacgtgaaatatctgaaacagtttttggatgcaacactgctagaggaggaaaacggtgtatgttgccaaagtcctt |
517 |
Q |
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| T |
35829892 |
ctttttcaaaaatatgttttacggtacgtgaaatatctgaaacagtttttggatgtaacactgctagaggaggaaaatggtgtatgttgccaaagtcctt |
35829793 |
T |
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| Q |
518 |
tgcagcatct |
527 |
Q |
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| T |
35829792 |
tgcagcatct |
35829783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 114 - 271
Target Start/End: Complemental strand, 54511 - 54354
Alignment:
| Q |
114 |
atctgaggtccatgcctaaaagcttgtccacttattccagcattcgaaagagtgcctccaacagtgagatgaagatagtctgtccaagattttggtgaca |
213 |
Q |
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| T |
54511 |
atctgaggaccatgcttaaatgcttgtccactaacaccagcattggacagagtaccaccaactgttagatgcaaataatctgtccatgatcttggtgcca |
54412 |
T |
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| Q |
214 |
atccatgttttagagtctcatgcagaatgtttatccacaactcaccacctgagacatc |
271 |
Q |
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| T |
54411 |
acccatatttcaaagtctcatgcaagatgtttatccacaattcaccaccagagacatc |
54354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 14785219 - 14785376
Alignment:
| Q |
114 |
atctgaggtccatgcctaaaagcttgtccacttattccagcattcgaaagagtgcctccaacagtgagatgaagatagtctgtccaagattttggtgaca |
213 |
Q |
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|||||||| |||||| |||| ||||||||||| | |||||||| || ||||| || ||||| || ||||| | ||| |||||||| ||| |||||| || |
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| T |
14785219 |
atctgaggaccatgcttaaatgcttgtccactaacaccagcattggacagagtaccaccaactgttagatgcaaataatctgtccatgatcttggtgcca |
14785318 |
T |
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| Q |
214 |
atccatgttttagagtctcatgcagaatgtttatccacaactcaccacctgagacatc |
271 |
Q |
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| T |
14785319 |
acccatatttcaaagtctcatgcaagatgtttatccacaattcaccaccagagacatc |
14785376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 52443540 - 52443479
Alignment:
| Q |
141 |
ccacttattccagcattcgaaagagtgcctccaacagtgagatgaagatagtctgtccaaga |
202 |
Q |
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| T |
52443540 |
ccactaattccagcattggaaagtgttcctccaaccgtgaggtaaagatagtcagtccaaga |
52443479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 286
Target Start/End: Original strand, 13415356 - 13415528
Alignment:
| Q |
114 |
atctgaggtccatgcctaaaagcttgtccacttattccagcattcgaaagagtgcctccaacagtgagatgaagatagtctgtccaagattttggtgaca |
213 |
Q |
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| T |
13415356 |
atctgtggaccatgcctaaaagcctgaccactaacaccagcattggataaagtaccaccaactgtcagatgcaaataatctgtccaagatcttggtgcca |
13415455 |
T |
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| Q |
214 |
atccatgttttagagtctcatgcagaatgtttatccacaactcaccacctgagacatcgacaaaaggaaattc |
286 |
Q |
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| T |
13415456 |
aaccatacttcaatgtctcatgcaaaatctttatccataattcacctcctgacacatccacataaggaaattc |
13415528 |
T |
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