View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13359_low_7 (Length: 486)

Name: NF13359_low_7
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13359_low_7
NF13359_low_7
[»] chr3 (15 HSPs)
chr3 (13-468)||(8567716-8568171)
chr3 (197-429)||(8472409-8472641)
chr3 (312-429)||(6837947-6838064)
chr3 (221-456)||(7750917-7751152)
chr3 (222-456)||(6143135-6143369)
chr3 (323-426)||(5281535-5281638)
chr3 (364-441)||(6479065-6479142)
chr3 (395-456)||(6721102-6721163)
chr3 (364-445)||(6736855-6736936)
chr3 (297-378)||(13269646-13269727)
chr3 (365-441)||(6519246-6519322)
chr3 (364-416)||(6553521-6553573)
chr3 (315-438)||(6917956-6918079)
chr3 (412-445)||(6849946-6849979)
chr3 (364-441)||(8455523-8455600)
[»] chr7 (1 HSPs)
chr7 (196-429)||(6572243-6572476)
[»] scaffold0425 (1 HSPs)
scaffold0425 (364-416)||(6560-6612)


Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Original strand, 8567716 - 8568171
Alignment:
Q  13 attctgcgttttttgcaatgaggatattcgataattcttattataaaatgaaaattttacatgtttgataaaaaataattcctgttccattaaattcact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8567716 attctgcgttttttgcaatgaggatattcgataattcttattataaaatgaaaattttacatgtttgataaaaaataattcctgttccattcaattcact 8567815  T
Q  113 tgactaaggaaactcaaacatattgcagagaacctcacaggcttgcgtatcgcactcagatcttgagacccttcatttgtgctcaatatcatggcagagc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  8567816 tgactaaggaaactcaaacatattgcagagaacctcacaggcttgcgtatcacattcagatcttgagacccttcatttgtgctcaatatcatggcagagc 8567915  T
Q  213 tgattgcgggggcatttctttcatctgtctttcaagtgactattcagaggttggcttcaagagatttcagaggctgctttcgtaaagggttggtggaaga 312  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8567916 tgattgcgggggcatttctttcgtctgtctttcaagtgactattcagaggttggcttcaagagatttcagaggctgctttcgtaaagggttggtggaaga 8568015  T
Q  313 acttgaaatcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8568016 acttgaaatcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaa 8568115  T
Q  413 catgaggtatatgaagttgagcaactattggatattattgctaccaatgcgcaaag 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8568116 catgaggtatatgaagttgagcaactattggatattattgctaccaatgcacaaag 8568171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 197 - 429
Target Start/End: Complemental strand, 8472641 - 8472409
Alignment:
Q  197 aatatcatggcagagctgattgcgggggcatttctttcatctgtctttcaagtgactattcagaggttggcttcaagagatttcagaggctgctttcgta 296  Q
    ||||||||||||||| ||||||  || ||||||||||||||  |||||||||| ||| |||||||  | || ||||||||||||| || |  ||    ||    
T  8472641 aatatcatggcagagttgattggtggagcatttctttcatcattctttcaagtcactcttcagagcattgcctcaagagatttcaaagacctctgcaata 8472542  T
Q  297 aagggttggtggaagaacttgaaatcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaactg 396  Q
    ||  ||||||  || |||| ||||||||| | |||||||| ||||||||||||||||||||||| |||||| ||||||| |||  | |||| ||||| ||    
T  8472541 aaaagttggttaaaaaactcgaaatcacattgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattg 8472442  T
Q  397 gcttcataaactaaaacatgaggtatatgaagt 429  Q
    |||| ||   |||||||||||||||||||||||    
T  8472441 gcttgatcgtctaaaacatgaggtatatgaagt 8472409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 312 - 429
Target Start/End: Original strand, 6837947 - 6838064
Alignment:
Q  312 aacttgaaatcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaa 411  Q
    |||||||| ||||||| ||||||||  ||||||||||| |||||||||| |||||| |||||||||||  | |||||||||| ||| || |||| |||||    
T  6837947 aacttgaagtcacactgaattctatcgatcaattgttgaatgatgcagagacaaagaagtaccaaaaccaaaatgtgaagaagtggtttgataatctaaa 6838046  T
Q  412 acatgaggtatatgaagt 429  Q
    ||||||||||||||||||    
T  6838047 acatgaggtatatgaagt 6838064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 456
Target Start/End: Complemental strand, 7751152 - 7750917
Alignment:
Q  221 ggggcatttctttcatctgtctttcaagtgactattcagaggttggcttcaagagatttcagaggctgctttcgtaaagggttggtggaagaacttgaaa 320  Q
    |||||||||||||| |||||||||||||||| |    |||||||||||||   ||||||||||| || ||| | | || || ||  | || |||||||||    
T  7751152 ggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcaagatttcagagactacttccatgaaaggctgtggaaaaaacttgaaa 7751053  T
Q  321 tcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatgaggt 420  Q
    |||||||  ||||||| ||| || |  ||||||||||||| | |||| |||||||| ||  | | |||||||| |||||| || | || |||||||| ||    
T  7751052 tcacactagattctatcaatgaagtactggatgatgcagatataaaggagtaccaacaccgaaacgtgaagaattggcttgatgatctcaaacatgatgt 7750953  T
Q  421 atatgaagttgagcaactattggatattattgctac 456  Q
    ||| ||| | ||||||||||| ||| | ||||||||    
T  7750952 atacgaattagagcaactattcgatgtgattgctac 7750917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 456
Target Start/End: Complemental strand, 6143369 - 6143135
Alignment:
Q  222 gggcatttctttcatctgtctttcaagtgactattcagaggttggcttcaagagatttcagaggctgctttcgtaaagggttggtggaagaacttgaaat 321  Q
    |||||||||||||  ||||| ||||| ||| |  | ||| |||  |||||| ||||||||||| ||  || | | ||||| ||||| || ||||||||||    
T  6143369 gggcatttctttcccctgtcattcaattgatttgtgagaagttaacttcaacagatttcagagactatttccatgaagggctggtgaaaaaacttgaaat 6143270  T
Q  322 cacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatgaggta 421  Q
    |||||| || ||||| ||| |  || |||||||  |||| |||||||||||||||||   |   |||||||| |||||| || |  | |  |||| | ||    
T  6143269 cacactcaagtctatcaattatgtgctggatgacacagagacaaagcagtaccaaaatcaaaccgtgaagaattggcttgatgatgtgagtcatgtgtta 6143170  T
Q  422 tatgaagttgagcaactattggatattattgctac 456  Q
    |||||||| ||||||||||||||| ||||||||||    
T  6143169 tatgaagtggagcaactattggatgttattgctac 6143135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 426
Target Start/End: Complemental strand, 5281638 - 5281535
Alignment:
Q  323 acacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatgaggtat 422  Q
    ||||||||||||||||||||| || |||| || ||||||  || ||||||| ||| ||||||||| ||||| |||||| || | || |||||||  ||||    
T  5281638 acacttaattctataaatcaagtgctggaagaagcagaacaaatgcagtacaaaagcacatatgtaaagaagtggcttgatgatcttaaacatgctgtat 5281539  T
Q  423 atga 426  Q
    ||||    
T  5281538 atga 5281535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 441
Target Start/End: Original strand, 6479065 - 6479142
Alignment:
Q  364 aaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatgaggtatatgaagttgagcaactatt 441  Q
    |||||||||||||| || |||||||||||| |||||| ||||||| |||||||  || |||||||  || ||||||||    
T  6479065 aaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactatt 6479142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 6721102 - 6721163
Alignment:
Q  395 tggcttcataaactaaaacatgaggtatatgaagttgagcaactattggatattattgctac 456  Q
    |||||| |||| || |||||||||||||| ||||| ||||||||||||||| | ||||||||    
T  6721102 tggcttgataatctcaaacatgaggtatacgaagtagagcaactattggatgtgattgctac 6721163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 445
Target Start/End: Complemental strand, 6736936 - 6736855
Alignment:
Q  364 aaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatgaggtatatgaagttgagcaactattggat 445  Q
    ||||||||||||||||| |||||||||||| |||||| || |||| |||||||   | |||||||  || ||||||||||||    
T  6736936 aaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagcagaccaactattggat 6736855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 13269646 - 13269727
Alignment:
Q  297 aagggttggtggaagaacttgaaatcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaa 378  Q
    ||||| ||||| || |||||||||||||||| || ||||| ||| | ||| ||||||| ||||| || ||||||||||||||    
T  13269646 aagggctggtgaaaaaacttgaaatcacactgaagtctatcaattatttgctggatgacgcagagactaagcagtaccaaaa 13269727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 6519246 - 6519322
Alignment:
Q  365 aagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatgaggtatatgaagttgagcaactatt 441  Q
    |||||||||||||||| |||||||||||| |||||| || |||| |||||||  || |||||||  || ||||||||    
T  6519246 aagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactatt 6519322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 6553521 - 6553573
Alignment:
Q  364 aaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatg 416  Q
    ||||||||||||||||| |||||||||||| |||||| || |||| |||||||    
T  6553521 aaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatg 6553573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 6918079 - 6917956
Alignment:
Q  315 ttgaaatcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaaca 414  Q
    ||||||||||| |  ||||||| ||| || || | |||||||||||   ||||||||||||||||  | | |||||||| |||||| || | || |||||    
T  6918079 ttgaaatcacattggattctatcaatgaagtgcttgatgatgcagaggtaaagcagtaccaaaaccgagacgtgaagaattggcttgatgatctcaaaca 6917980  T
Q  415 tgaggtatatgaagttgagcaact 438  Q
     |||||||||||||| || |||||    
T  6917979 cgaggtatatgaagtagaccaact 6917956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 6849946 - 6849979
Alignment:
Q  412 acatgaggtatatgaagttgagcaactattggat 445  Q
    |||||||||||| |||||||||||||||||||||    
T  6849946 acatgaggtatacgaagttgagcaactattggat 6849979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 441
Target Start/End: Complemental strand, 8455600 - 8455523
Alignment:
Q  364 aaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatgaggtatatgaagttgagcaactatt 441  Q
    ||||||||||||||||| |||||||||||| |||||| || | || |||||||  || |||||||  || ||||||||    
T  8455600 aaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactatt 8455523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 196 - 429
Target Start/End: Original strand, 6572243 - 6572476
Alignment:
Q  196 caatatcatggcagagctgattgcgggggcatttctttcatctgtctttcaagtgactattcagaggttggcttcaagagatttcagaggctgctttcgt 295  Q
    |||||||||||||||||||||||| || ||||||||||| ||  |||||||||| ||| || ||||||| || ||||||||||||| ||    |||   |    
T  6572243 caatatcatggcagagctgattgctggagcatttctttcgtcgttctttcaagtcactcttgagaggtttgcctcaagagatttcaaagatctcttcaat 6572342  T
Q  296 aaagggttggtggaagaacttgaaatcacacttaattctataaatcaattgttggatgatgcagaaacaaagcagtaccaaaacacatatgtgaagaact 395  Q
    ||||||||||| ||| |||||||||||||| | |||||||| ||||||||||||||||||||||| ||||| |||||||||||| || | |||||||  |    
T  6572343 aaagggttggttgaaaaacttgaaatcacaatgaattctatcaatcaattgttggatgatgcagagacaaaacagtaccaaaacccaaacgtgaagattt 6572442  T
Q  396 ggcttcataaactaaaacatgaggtatatgaagt 429  Q
    ||||| ||   |||||||||||||||||||||||    
T  6572443 ggcttgatcgtctaaaacatgaggtatatgaagt 6572476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 6560 - 6612
Alignment:
Q  364 aaagcagtaccaaaacacatatgtgaagaactggcttcataaactaaaacatg 416  Q
    ||||||||||||||||| |||||||||||| |||||| || |||| |||||||    
T  6560 aaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatg 6612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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