View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13359_low_8 (Length: 451)
Name: NF13359_low_8
Description: NF13359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13359_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 24 - 433
Target Start/End: Original strand, 3328467 - 3328876
Alignment:
| Q |
24 |
gtcacctccatcacctactctcaacgaagcgaatccaatcggcatcctctcacaatgaaccctaacagctctattaaaatcatgaagaatattcctaaac |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3328467 |
gtcacctccatcacctactctcaacgaagcgaatccaatcggcatcctctcacaatgaaccctaacagctctattaaaatcatgaagaatattcctaaac |
3328566 |
T |
|
| Q |
124 |
ttataaccaccaccgctattgtttaaactgagtgaaacggtgcgttttgatgatgatgccacacgtgtgaggttgttgaagtaaagataattagaaagaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3328567 |
ttataaccaccaccgctattgtttaaactgagtgaaacggtgcgttttgatgatgatgccacacgtgtgaggttgttgaagtaaagataattagaaagaa |
3328666 |
T |
|
| Q |
224 |
gtgaagctggtgaacatgcttctgaagttaggttaagaaacgacgacgtatcgagtgtgaatcgaccaattcgtgaacctaattcaagaaccgcattggg |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3328667 |
gtgaagctggtgaacatgcttctgaagttaggtttagaaacgacgacgtatcgagtgtgaatcgaccaattcgtgaacctaattcaagaaccgcatttgg |
3328766 |
T |
|
| Q |
324 |
ttcttttgtaacacgcgtagctggattatacataataggataattagtttgttaattttgtgtaatgaggttgaagaggttaaggttttggaagtgaaat |
423 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3328767 |
ttcttttgtaacacgcgtagctggattatacataataggataattagtttgttaattttgtgtaatgaggttgaagaggttaaggttttggaagtgaaac |
3328866 |
T |
|
| Q |
424 |
gtgtacattc |
433 |
Q |
| |
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|||| ||||| |
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|
| T |
3328867 |
gtgttcattc |
3328876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 24 - 374
Target Start/End: Original strand, 10026941 - 10027291
Alignment:
| Q |
24 |
gtcacctccatcacctactctcaacgaagcgaatccaatcggcatcctctcacaatgaaccctaacagctctattaaaatcatgaagaatattcctaaac |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10026941 |
gtcacctccatcacctactctcaacgaagcgaatccaatcggcatcctctcacaatgaaccctaacagctctattaaaatcatgaagaatattcctaaac |
10027040 |
T |
|
| Q |
124 |
ttataaccaccaccgctattgtttaaactgagtgaaacggtgcgttttgatgatgatgccacacgtgtgaggttgttgaagtaaagataattagaaagaa |
223 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
10027041 |
ttataaccaccaccgctattgtttaaactgagtgaaacggtgcgttttgatgatgatgccacacgtgtgaggttgttgaaggaaagataattagaaagaa |
10027140 |
T |
|
| Q |
224 |
gtgaagctggtgaacatgcttctgaagttaggttaagaaacgacgacgtatcgagtgtgaatcgaccaattcgtgaacctaattcaagaaccgcattggg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10027141 |
gtgaagctggtgaacatgcttctgaagttaggttaagaaacgacgacgtatcgagtgtgaatcgaccaattcgtgaacctaattcaagaaccgcattggg |
10027240 |
T |
|
| Q |
324 |
ttcttttgtaacacgcgtagctggattatacataataggataattagtttg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10027241 |
ttcttttgtaacacgcgtagctggattatacataataggataattagtttg |
10027291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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