View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1335_high_12 (Length: 388)
Name: NF1335_high_12
Description: NF1335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1335_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 221 - 380
Target Start/End: Original strand, 24286894 - 24287053
Alignment:
| Q |
221 |
gattaccaccacccttaactctcttagtctataagttttacgaccacgagcctgaaaatccatccctcttcacttgtaacatatcaaaaactcttagttt |
320 |
Q |
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| T |
24286894 |
gattaccaccacccttaactctcttagtctttaagttttacgaccacgagcctgaaaatccatccctcttcacttgtaacatatcaaaaactcttagttt |
24286993 |
T |
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| Q |
321 |
tactaattcttgtatttgcaactttccaaatcttaattcaattctggtttttcctatgct |
380 |
Q |
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| T |
24286994 |
tactaattcttgtatttgcaactttccaaatcttaattcaattctggtttttcttatgct |
24287053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 24286685 - 24286842
Alignment:
| Q |
32 |
atggaacaagtgaagaagttcatgcaaaggtttatgttttcaaggtttagaagttggacgatgaagtgatactgcctaaggacaagacaaatgagatcaa |
131 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24286685 |
atggaacaagtgaagaagttcatgcaaaagtttatgttttcaaggtttagaagttggacgatgaagtgatacagcctaaggacaagacaaatgagatcaa |
24286784 |
T |
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| Q |
132 |
atggtaaaatcctatatgc---attacgcccacccgtaaaggccattcatgatcgtaa |
186 |
Q |
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| T |
24286785 |
atggtaaaatcctatatgcattattacgcccacccgtaaaggccattcatgatcgtaa |
24286842 |
T |
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